Literature DB >> 19515549

Turnover of organelles by autophagy in yeast.

Jean-Claude Farré1, Roswitha Krick, Suresh Subramani, Michael Thumm.   

Abstract

Efficient detection and removal of superfluous or damaged organelles are crucial to maintain cellular homeostasis and to assure cell survival. Growing evidence shows that organelles or parts of them can be removed by selective subtypes of otherwise unselective macroautophagy and microautophagy. This requires both the adaptation of the core autophagic machinery and sophisticated mechanisms to recognize organelles destined for turnover. We review the current knowledge on autophagic removal of peroxisomes, mitochondria, ER and parts of the nucleus with an emphasis on yeasts as a model eukaryote.

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Year:  2009        PMID: 19515549      PMCID: PMC2725217          DOI: 10.1016/j.ceb.2009.04.015

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  69 in total

Review 1.  Autophagosome formation: core machinery and adaptations.

Authors:  Zhiping Xie; Daniel J Klionsky
Journal:  Nat Cell Biol       Date:  2007-10       Impact factor: 28.824

2.  Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion.

Authors:  Hitoshi Nakatogawa; Yoshinobu Ichimura; Yoshinori Ohsumi
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

3.  A ubiquitin-like system mediates protein lipidation.

Authors:  Y Ichimura; T Kirisako; T Takao; Y Satomi; Y Shimonishi; N Ishihara; N Mizushima; I Tanida; E Kominami; M Ohsumi; T Noda; Y Ohsumi
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

4.  Autophagosome requires specific early Sec proteins for its formation and NSF/SNARE for vacuolar fusion.

Authors:  N Ishihara; M Hamasaki; S Yokota; K Suzuki; Y Kamada; A Kihara; T Yoshimori; T Noda; Y Ohsumi
Journal:  Mol Biol Cell       Date:  2001-11       Impact factor: 4.138

5.  Paz2 and 13 other PAZ gene products regulate vacuolar engulfment of peroxisomes during micropexophagy.

Authors:  Hiroyuki Mukaiyama; Masahide Oku; Misuzu Baba; Takeshi Samizo; Adam T Hammond; Benjamin S Glick; Nobuo Kato; Yasuyoshi Sakai
Journal:  Genes Cells       Date:  2002-01       Impact factor: 1.891

6.  Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast.

Authors:  M Priault; B Salin; J Schaeffer; F M Vallette; J-P di Rago; J-C Martinou
Journal:  Cell Death Differ       Date:  2005-06-10       Impact factor: 15.828

7.  Atg18 regulates organelle morphology and Fab1 kinase activity independent of its membrane recruitment by phosphatidylinositol 3,5-bisphosphate.

Authors:  Jem A Efe; Roberto J Botelho; Scott D Emr
Journal:  Mol Biol Cell       Date:  2007-08-15       Impact factor: 4.138

8.  Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy.

Authors:  K Nowikovsky; S Reipert; R J Devenish; R J Schweyen
Journal:  Cell Death Differ       Date:  2007-06-01       Impact factor: 15.828

9.  Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway.

Authors:  M U Hutchins; M Veenhuis; D J Klionsky
Journal:  J Cell Sci       Date:  1999-11       Impact factor: 5.285

10.  Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole.

Authors:  J Kim; Y Kamada; P E Stromhaug; J Guan; A Hefner-Gravink; M Baba; S V Scott; Y Ohsumi; W A Dunn; D J Klionsky
Journal:  J Cell Biol       Date:  2001-04-16       Impact factor: 10.539

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  50 in total

Review 1.  Microautophagy: lesser-known self-eating.

Authors:  Wen-wen Li; Jian Li; Jin-ku Bao
Journal:  Cell Mol Life Sci       Date:  2011-11-12       Impact factor: 9.261

2.  TubStain: a universal peptide-tool to label microtubules.

Authors:  Carsten Theiss; Alexander Neuhaus; Wolfgang Schliebs; Ralf Erdmann
Journal:  Histochem Cell Biol       Date:  2012-07-06       Impact factor: 4.304

Review 3.  From signal transduction to autophagy of plant cell organelles: lessons from yeast and mammals and plant-specific features.

Authors:  Sigrun Reumann; Olga Voitsekhovskaja; Cathrine Lillo
Journal:  Protoplasma       Date:  2010-08-24       Impact factor: 3.356

Review 4.  The Activation and Function of Autophagy in Alcoholic Liver Disease.

Authors:  Bilon Khambu; Lin Wang; Hao Zhang; Xiao-Ming Yin
Journal:  Curr Mol Pharmacol       Date:  2017       Impact factor: 3.339

5.  Beclin 1/Bcl-2 complex-dependent autophagy activity modulates renal susceptibility to ischemia-reperfusion injury and mediates renoprotection by Klotho.

Authors:  Peng Li; Mingjun Shi; Jenny Maique; Joy Shaffer; Shirley Yan; Orson W Moe; Ming Chang Hu
Journal:  Am J Physiol Renal Physiol       Date:  2020-01-27

6.  Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) phosphorylation by protein kinase Cδ (PKCδ) inhibits mitochondria elimination by lysosomal-like structures following ischemia and reoxygenation-induced injury.

Authors:  Gouri Yogalingam; Sunhee Hwang; Julio C B Ferreira; Daria Mochly-Rosen
Journal:  J Biol Chem       Date:  2013-05-07       Impact factor: 5.157

Review 7.  Variations on a theme: plant autophagy in comparison to yeast and mammals.

Authors:  Tamar Avin-Wittenberg; Arik Honig; Gad Galili
Journal:  Protoplasma       Date:  2011-06-10       Impact factor: 3.356

8.  Reduced basal autophagy and impaired mitochondrial dynamics due to loss of Parkinson's disease-associated protein DJ-1.

Authors:  Guido Krebiehl; Sabine Ruckerbauer; Lena F Burbulla; Nicole Kieper; Brigitte Maurer; Jens Waak; Hartwig Wolburg; Zemfira Gizatullina; Frank N Gellerich; Dirk Woitalla; Olaf Riess; Philipp J Kahle; Tassula Proikas-Cezanne; Rejko Krüger
Journal:  PLoS One       Date:  2010-02-23       Impact factor: 3.240

Review 9.  Molecular mechanism and physiological role of pexophagy.

Authors:  Ravi Manjithaya; Taras Y Nazarko; Jean-Claude Farré; Suresh Subramani
Journal:  FEBS Lett       Date:  2010-01-17       Impact factor: 4.124

10.  A yeast MAPK cascade regulates pexophagy but not other autophagy pathways.

Authors:  Ravi Manjithaya; Shveta Jain; Jean-Claude Farré; Suresh Subramani
Journal:  J Cell Biol       Date:  2010-04-12       Impact factor: 10.539

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