| Literature DB >> 19513788 |
Sarah E Lloyd1, Julia Grizenkova, Hirva Pota, John Collinge.
Abstract
Prion diseases are transmissible neurodegenerative disorders of mammalian species and include scrapie, bovine spongiform encephalopathy (BSE), and variant Creutzfeldt-Jakob disease (vCJD). The prion protein (PrP) plays a key role in the disease, with coding polymorphism in both human and mouse influencing disease susceptibility and incubation time, respectively. Other genes are also thought to be important and a plausible candidate is Sprn, which encodes the PrP-like protein Shadoo (Sho). Sho is expressed in the adult central nervous system and exhibits neuroprotective activity reminiscent of PrP in an in vitro assay. To investigate the role of Sprn in prion disease incubation time we sequenced the open reading frame (ORF) in a diverse panel of mice and saw little variation except in strains derived from wild-trapped mice. Sequencing the untranslated regions revealed polymorphisms that allowed us to carry out an association study of incubation period in the Northport heterogeneous stock of mice inoculated with Chandler/RML prions. We also examined the expression level of Sprn mRNA in the brains of normal and prion-infected mice and saw no correlation with either genotype or incubation time. We therefore conclude that Sprn does not play a major role in prion disease incubation time in these strains of mice.Entities:
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Year: 2009 PMID: 19513788 PMCID: PMC2714444 DOI: 10.1007/s00335-009-9194-5
Source DB: PubMed Journal: Mamm Genome ISSN: 0938-8990 Impact factor: 2.957
Fig. 1Sprn mRNA expression. cDNA was prepared from the whole brains of uninfected 6-8-week-old male mice or mice at the terminal stages of disease following intracerebral inoculation with Chandler/RML mouse-adapted scrapie prions. All samples were duplexed for Sprn (Fam-label) and an endogenous control, GAPDH, β-actin, or Thy-1 (Vic-label). Samples were run in triplicate with n = 6 for each mouse strain/group (except CBA where n = 3 and NZW-RML where n = 5). Mean ± SEM. Sprn mRNA expression level is expressed in arbitrary units as normalised by the geometric mean of the quantity of the endogenous controls (y axis). a Individual parental strains of the HS mice. b Mouse strains are grouped according to the strain distribution pattern seen in Sprn (Group I = A, AKR, BALB, C3H, C57, DBA; Group II = CBA). c Comparison of Sprn mRNA expression in normal and RML infected mice. Dark grey and light grey bars represent uninfected and RML infected mice, respectively
Sprn open reading frame polymorphisms
| L11L CT | G95V G | G108G GG | L134F | G136G GG | |
|---|---|---|---|---|---|
| A/J | G | G | A | C | C |
| AKR/J | G | G | A | C | C |
| BALB/cJ | G | G | A | C | C |
| C3H/HeJ | G | G | A | C | C |
| C57BL6/J | G | G | A | C | C |
| CBA/J | G | G | A | C | C |
| DBA/2J | G | G | A | C | C |
| LP/J | G | G | A | C | C |
| 129/Sv | G | G | A | C | C |
| FVB/NHsd | G | G | A | C | C |
| SWR/OlaHsd | G | G | A | C | C |
| NZW/OlaHsd | G | G | A | C | C |
| RIIIS/J | G | G | A | C | C |
| SJL/OlaHsd | G | G | A | C | C |
| JU/FaCt ( | G | G | A | C | C |
| VM/Dk ( | G | G | A | C | C |
| MAI/Pas( | G | G | C | C | |
| WLA/Pas | G | G | A | C | C |
| PWK/Pas | G | G | C | C | |
| WMP/Pas | G | G | A | C | C |
| MBT/Pas | G | G | A | C | C |
| CD-1 | G | G | A | C | C |
| CAST/Ei | G | C | C | ||
| SEG/Pas | G |
All strains are Prnp unless otherwise indicated (Carlson et al. 1988; Lloyd et al. 2004)
HS parental strains Sprn polymorphisms
| Position (bp) | A | AKR | BALB | C3H | C57 | CBA | DBA | LP | |
|---|---|---|---|---|---|---|---|---|---|
| 5′ UTR #1 | 73 | C | C | C | C | C | A | C | C |
| 5′ UTR #2 | 89 | C | C | C | C | C | del | C | C |
| Intron 1 | 111 | A | A | A | A | A | G | A | A |
| Intron 1 | 143 | C | C | C | C | C | A | C | C |
| Intron 1 | 149 | G | G | G | G | G | C | G | G |
| Intron 1 | 155 | G | G | G | G | G | A | G | G |
| 3′ UTR | 2024 | G | G | G | G | G | G | G | G |
SNP positions for the transcript are numbered from the start of the 5′ UTR and the intronic SNPs are shown from the start of intron 1 (genomic sequence from the UCSC genome browser, release July 2007)
del single base deletion, UTR untranslated region