Literature DB >> 19499053

Implementation of automation in a small-scale DNA sequencing core facility.

J L Ware1, L Moran, C L Lin, B Slatko.   

Abstract

New England Biolabs (NEB) sequencing core facility provides automated sequencing services to support various company-wide projects in house, but on a very small scale of about 1000 to 1500 reactions per month. A procedure has been implemented at the NEB core sequencing facility to integrate simplified methods and robotics to provide a more efficient small-scale process. This has been done using a Beckman Biomek 2000 robot combined with an MJ DNA Engine, 96-well plate cycler (PTC-200), AB 373 and 377 sequencers, BMA Singel gels, and several other materials that help reduce the time required for otherwise lengthy procedures in a cost-efficient manner. Protocols have also been developed for efficient sequencing of a variety of templates submitted to the NEB core facility.

Year:  2000        PMID: 19499053      PMCID: PMC2291641     

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  1 in total

1.  Fluorescence-based sequencing directly from bacterial and P1-derived artificial chromosomes.

Authors:  C Boysen; M I Simon; L Hood
Journal:  Biotechniques       Date:  1997-12       Impact factor: 1.993

  1 in total
  3 in total

1.  SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms.

Authors:  Jean-Claude Nicod; Carlo R Largiadèr
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

2.  Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.

Authors:  Alice Sears; Luke J Peakman; Geoffrey G Wilson; Mark D Szczelkun
Journal:  Nucleic Acids Res       Date:  2005-08-24       Impact factor: 16.971

3.  Miniaturization and optimization of 384-well compatible RNA sequencing library preparation.

Authors:  Madeline Y Mayday; Lillian M Khan; Eric D Chow; Matt S Zinter; Joseph L DeRisi
Journal:  PLoS One       Date:  2019-01-10       Impact factor: 3.240

  3 in total

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