Literature DB >> 19497796

Characterizing DNA methylation patterns in pancreatic cancer genome.

Aik Choon Tan1, Antonio Jimeno, Steven H Lin, Jenna Wheelhouse, Fonda Chan, Anna Solomon, N V Rajeshkumar, Belen Rubio-Viqueira, Manuel Hidalgo.   

Abstract

We performed a global methylation profiling assay on 1505 CpG sites across 807 genes to characterize DNA methylation patterns in pancreatic cancer genome. We found 289 CpG sites that were differentially methylated in normal pancreas, pancreatic tumors and cancer cell lines. We identified 23 and 35 candidate genes that are regulated by hypermethylation and hypomethylation in pancreatic cancer, respectively. We also identified candidate methylation markers that alter the expression of genes critical to gemcitabine susceptibility in pancreatic cancer. These results indicate that aberrant DNA methylation is a frequent epigenetic event in pancreatic cancer; and by using global methylation profiling assay, it is possible to identify these markers for diagnostic and therapeutic purposes in this disease.

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Year:  2009        PMID: 19497796      PMCID: PMC5527529          DOI: 10.1016/j.molonc.2009.03.004

Source DB:  PubMed          Journal:  Mol Oncol        ISSN: 1574-7891            Impact factor:   6.603


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