Literature DB >> 19496142

Exploring multiplicity conditions in enzymatic reaction networks.

Irene Otero-Muras1, Julio R Banga, Antonio A Alonso.   

Abstract

In this work, a novel algorithmic approach to detect multiplicity of steady states in enzymatic reaction networks is presented. The method exploits the structural properties of networks derived from the Chemical Reaction Network Theory. In first instance, the space of parameters is divided in different regions according to the qualitative behavior induced by the parameters in the long term dynamics of the network. Once the regions are identified, a condition for the appearance of multiplicities is checked in the different regions by solving a given optimization problem. In this way, the method allows the characterization of the whole parameter space of biochemical networks in terms of the appearance or not of multistability. The approach is illustrated through a well-known case of enzymatic catalysis with substrate inhibition. 2009 American Institute of Chemical Engineers

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Year:  2009        PMID: 19496142     DOI: 10.1002/btpr.112

Source DB:  PubMed          Journal:  Biotechnol Prog        ISSN: 1520-6033


  5 in total

1.  Emergence of switch-like behavior in a large family of simple biochemical networks.

Authors:  Dan Siegal-Gaskins; Maria Katherine Mejia-Guerra; Gregory D Smith; Erich Grotewold
Journal:  PLoS Comput Biol       Date:  2011-05-12       Impact factor: 4.475

2.  Characterizing multistationarity regimes in biochemical reaction networks.

Authors:  Irene Otero-Muras; Julio R Banga; Antonio A Alonso
Journal:  PLoS One       Date:  2012-07-03       Impact factor: 3.240

3.  Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.

Authors:  Irene Otero-Muras; Pencho Yordanov; Joerg Stelling
Journal:  PLoS Comput Biol       Date:  2017-04-03       Impact factor: 4.475

Review 4.  Reverse engineering and identification in systems biology: strategies, perspectives and challenges.

Authors:  Alejandro F Villaverde; Julio R Banga
Journal:  J R Soc Interface       Date:  2013-12-04       Impact factor: 4.118

5.  Identifying parameter regions for multistationarity.

Authors:  Carsten Conradi; Elisenda Feliu; Maya Mincheva; Carsten Wiuf
Journal:  PLoS Comput Biol       Date:  2017-10-03       Impact factor: 4.475

  5 in total

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