Literature DB >> 19492398

Deforming DNA: from physics to biology.

Chantal Prévost1, Masayuki Takahashi, Richard Lavery.   

Abstract

The DNA double helix has become a modern icon which symbolizes our understanding of the molecular basis of life. It is less widely recognized that the double helix proposed by Watson and Crick more than half a century ago is a remarkably adaptable molecule that can undergo major conformational rearrangements without being irreversibly damaged. Indeed, DNA deformation is an intrinsic feature of many of the biological processes in which it is involved. Over the last two decades, single-molecule experiments coupled with molecular modeling have transformed our understanding of DNA flexibility, while the accumulation of high-resolution structures of DNA-protein complexes have demonstrated how organisms can exploit this property as a useful feature for preserving, reading, replicating, and packaging the genetic message. In this Minireview we summarize the information now available on the extreme--and the less extreme--deformations of the double helix.

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Year:  2009        PMID: 19492398     DOI: 10.1002/cphc.200900253

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  15 in total

1.  Strong deformations of DNA: Effect on the persistence length.

Authors:  Kyryło A Simonov
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-28       Impact factor: 1.890

Review 2.  Close encounters with DNA.

Authors:  C Maffeo; J Yoo; J Comer; D B Wells; B Luan; A Aksimentiev
Journal:  J Phys Condens Matter       Date:  2014-09-19       Impact factor: 2.333

3.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

Review 4.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

5.  Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.

Authors:  Adrien Saladin; Christopher Amourda; Pierre Poulain; Nicolas Férey; Marc Baaden; Martin Zacharias; Olivier Delalande; Chantal Prévost
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

6.  Effects of cytosine hydroxymethylation on DNA strand separation.

Authors:  Philip M D Severin; Xueqing Zou; Klaus Schulten; Hermann E Gaub
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

7.  Searching target sites on DNA by proteins: Role of DNA dynamics under confinement.

Authors:  Anupam Mondal; Arnab Bhattacherjee
Journal:  Nucleic Acids Res       Date:  2015-09-22       Impact factor: 16.971

8.  Tension induces a base-paired overstretched DNA conformation.

Authors:  Niklas Bosaeus; Afaf H El-Sagheer; Tom Brown; Steven B Smith; Björn Akerman; Carlos Bustamante; Bengt Nordén
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

9.  Predicting the effects of basepair mutations in DNA-protein complexes by thermodynamic integration.

Authors:  Frank R Beierlein; G Geoff Kneale; Timothy Clark
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

10.  Recognition of methylated DNA through methyl-CpG binding domain proteins.

Authors:  Xueqing Zou; Wen Ma; Ilia A Solov'yov; Christophe Chipot; Klaus Schulten
Journal:  Nucleic Acids Res       Date:  2011-11-22       Impact factor: 16.971

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