Literature DB >> 19491929

Dynamics and diversity in autophagy mechanisms: lessons from yeast.

Hitoshi Nakatogawa1, Kuninori Suzuki, Yoshiaki Kamada, Yoshinori Ohsumi.   

Abstract

Autophagy is a fundamental function of eukaryotic cells and is well conserved from yeast to humans. The most remarkable feature of autophagy is the synthesis of double membrane-bound compartments that sequester materials to be degraded in lytic compartments, a process that seems to be mechanistically distinct from conventional membrane traffic. The discovery of autophagy in yeast and the genetic tractability of this organism have allowed us to identify genes that are responsible for this process, which has led to the explosive growth of this research field seen today. Analyses of autophagy-related (Atg) proteins have unveiled dynamic and diverse aspects of mechanisms that underlie membrane formation during autophagy.

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Year:  2009        PMID: 19491929     DOI: 10.1038/nrm2708

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  103 in total

1.  Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

Authors:  S V Scott; J Guan; M U Hutchins; J Kim; D J Klionsky
Journal:  Mol Cell       Date:  2001-06       Impact factor: 17.970

2.  Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy.

Authors:  Per E Strømhaug; Fulvio Reggiori; Ju Guan; Chao-Wen Wang; Daniel J Klionsky
Journal:  Mol Biol Cell       Date:  2004-05-21       Impact factor: 4.138

3.  An Atg1/Atg13 complex with multiple roles in TOR-mediated autophagy regulation.

Authors:  Yu-Yun Chang; Thomas P Neufeld
Journal:  Mol Biol Cell       Date:  2009-02-18       Impact factor: 4.138

4.  Assortment of phosphatidylinositol 3-kinase complexes--Atg14p directs association of complex I to the pre-autophagosomal structure in Saccharomyces cerevisiae.

Authors:  Keisuke Obara; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Mol Biol Cell       Date:  2006-01-18       Impact factor: 4.138

5.  Apg2p functions in autophagosome formation on the perivacuolar structure.

Authors:  T Shintani; K Suzuki; Y Kamada; T Noda; Y Ohsumi
Journal:  J Biol Chem       Date:  2001-05-29       Impact factor: 5.157

6.  Hierarchy of Atg proteins in pre-autophagosomal structure organization.

Authors:  Kuninori Suzuki; Yuka Kubota; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Genes Cells       Date:  2007-02       Impact factor: 1.891

7.  Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast.

Authors:  Akiko Kuma; Noboru Mizushima; Naotada Ishihara; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2002-03-15       Impact factor: 5.157

8.  Organization of the pre-autophagosomal structure responsible for autophagosome formation.

Authors:  Tomoko Kawamata; Yoshiaki Kamada; Yukiko Kabeya; Takayuki Sekito; Yoshinori Ohsumi
Journal:  Mol Biol Cell       Date:  2008-02-20       Impact factor: 4.138

9.  The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice.

Authors:  Yu-shin Sou; Satoshi Waguri; Jun-ichi Iwata; Takashi Ueno; Tsutomu Fujimura; Taichi Hara; Naoki Sawada; Akane Yamada; Noboru Mizushima; Yasuo Uchiyama; Eiki Kominami; Keiji Tanaka; Masaaki Komatsu
Journal:  Mol Biol Cell       Date:  2008-09-03       Impact factor: 4.138

Review 10.  Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.

Authors:  Daniel J Klionsky; Hagai Abeliovich; Patrizia Agostinis; Devendra K Agrawal; Gjumrakch Aliev; David S Askew; Misuzu Baba; Eric H Baehrecke; Ben A Bahr; Andrea Ballabio; Bruce A Bamber; Diane C Bassham; Ettore Bergamini; Xiaoning Bi; Martine Biard-Piechaczyk; Janice S Blum; Dale E Bredesen; Jeffrey L Brodsky; John H Brumell; Ulf T Brunk; Wilfried Bursch; Nadine Camougrand; Eduardo Cebollero; Francesco Cecconi; Yingyu Chen; Lih-Shen Chin; Augustine Choi; Charleen T Chu; Jongkyeong Chung; Peter G H Clarke; Robert S B Clark; Steven G Clarke; Corinne Clavé; John L Cleveland; Patrice Codogno; María I Colombo; Ana Coto-Montes; James M Cregg; Ana Maria Cuervo; Jayanta Debnath; Francesca Demarchi; Patrick B Dennis; Phillip A Dennis; Vojo Deretic; Rodney J Devenish; Federica Di Sano; J Fred Dice; Marian Difiglia; Savithramma Dinesh-Kumar; Clark W Distelhorst; Mojgan Djavaheri-Mergny; Frank C Dorsey; Wulf Dröge; Michel Dron; William A Dunn; Michael Duszenko; N Tony Eissa; Zvulun Elazar; Audrey Esclatine; Eeva-Liisa Eskelinen; László Fésüs; Kim D Finley; José M Fuentes; Juan Fueyo; Kozo Fujisaki; Brigitte Galliot; Fen-Biao Gao; David A Gewirtz; Spencer B Gibson; Antje Gohla; Alfred L Goldberg; Ramon Gonzalez; Cristina González-Estévez; Sharon Gorski; Roberta A Gottlieb; Dieter Häussinger; You-Wen He; Kim Heidenreich; Joseph A Hill; Maria Høyer-Hansen; Xun Hu; Wei-Pang Huang; Akiko Iwasaki; Marja Jäättelä; William T Jackson; Xuejun Jiang; Shengkan Jin; Terje Johansen; Jae U Jung; Motoni Kadowaki; Chanhee Kang; Ameeta Kelekar; David H Kessel; Jan A K W Kiel; Hong Pyo Kim; Adi Kimchi; Timothy J Kinsella; Kirill Kiselyov; Katsuhiko Kitamoto; Erwin Knecht; Masaaki Komatsu; Eiki Kominami; Seiji Kondo; Attila L Kovács; Guido Kroemer; Chia-Yi Kuan; Rakesh Kumar; Mondira Kundu; Jacques Landry; Marianne Laporte; Weidong Le; Huan-Yao Lei; Michael J Lenardo; Beth Levine; Andrew Lieberman; Kah-Leong Lim; Fu-Cheng Lin; Willisa Liou; Leroy F Liu; Gabriel Lopez-Berestein; Carlos López-Otín; Bo Lu; Kay F Macleod; Walter Malorni; Wim Martinet; Ken Matsuoka; Josef Mautner; Alfred J Meijer; Alicia Meléndez; Paul Michels; Giovanni Miotto; Wilhelm P Mistiaen; Noboru Mizushima; Baharia Mograbi; Iryna Monastyrska; Michael N Moore; Paula I Moreira; Yuji Moriyasu; Tomasz Motyl; Christian Münz; Leon O Murphy; Naweed I Naqvi; Thomas P Neufeld; Ichizo Nishino; Ralph A Nixon; Takeshi Noda; Bernd Nürnberg; Michinaga Ogawa; Nancy L Oleinick; Laura J Olsen; Bulent Ozpolat; Shoshana Paglin; Glen E Palmer; Issidora Papassideri; Miles Parkes; David H Perlmutter; George Perry; Mauro Piacentini; Ronit Pinkas-Kramarski; Mark Prescott; Tassula Proikas-Cezanne; Nina Raben; Abdelhaq Rami; Fulvio Reggiori; Bärbel Rohrer; David C Rubinsztein; Kevin M Ryan; Junichi Sadoshima; Hiroshi Sakagami; Yasuyoshi Sakai; Marco Sandri; Chihiro Sasakawa; Miklós Sass; Claudio Schneider; Per O Seglen; Oleksandr Seleverstov; Jeffrey Settleman; John J Shacka; Irving M Shapiro; Andrei Sibirny; Elaine C M Silva-Zacarin; Hans-Uwe Simon; Cristiano Simone; Anne Simonsen; Mark A Smith; Katharina Spanel-Borowski; Vickram Srinivas; Meredith Steeves; Harald Stenmark; Per E Stromhaug; Carlos S Subauste; Seiichiro Sugimoto; David Sulzer; Toshihiko Suzuki; Michele S Swanson; Ira Tabas; Fumihiko Takeshita; Nicholas J Talbot; Zsolt Tallóczy; Keiji Tanaka; Kozo Tanaka; Isei Tanida; Graham S Taylor; J Paul Taylor; Alexei Terman; Gianluca Tettamanti; Craig B Thompson; Michael Thumm; Aviva M Tolkovsky; Sharon A Tooze; Ray Truant; Lesya V Tumanovska; Yasuo Uchiyama; Takashi Ueno; Néstor L Uzcátegui; Ida van der Klei; Eva C Vaquero; Tibor Vellai; Michael W Vogel; Hong-Gang Wang; Paul Webster; John W Wiley; Zhijun Xi; Gutian Xiao; Joachim Yahalom; Jin-Ming Yang; George Yap; Xiao-Ming Yin; Tamotsu Yoshimori; Li Yu; Zhenyu Yue; Michisuke Yuzaki; Olga Zabirnyk; Xiaoxiang Zheng; Xiongwei Zhu; Russell L Deter
Journal:  Autophagy       Date:  2007-11-21       Impact factor: 16.016

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  705 in total

1.  Tobacco calmodulin-like protein provides secondary defense by binding to and directing degradation of virus RNA silencing suppressors.

Authors:  Kenji S Nakahara; Chikara Masuta; Syouta Yamada; Hanako Shimura; Yukiko Kashihara; Tomoko S Wada; Ayano Meguro; Kazunori Goto; Kazuki Tadamura; Kae Sueda; Toru Sekiguchi; Jun Shao; Noriko Itchoda; Takeshi Matsumura; Manabu Igarashi; Kimihito Ito; Richard W Carthew; Ichiro Uyeda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  Spatial coupling of mTOR and autophagy augments secretory phenotypes.

Authors:  Masako Narita; Andrew R J Young; Satoko Arakawa; Shamith A Samarajiwa; Takayuki Nakashima; Sei Yoshida; Sungki Hong; Lorraine S Berry; Stefanie Reichelt; Manuela Ferreira; Simon Tavaré; Ken Inoki; Shigeomi Shimizu; Masashi Narita
Journal:  Science       Date:  2011-04-21       Impact factor: 47.728

Review 3.  Mechanisms of mitochondria and autophagy crosstalk.

Authors:  Angelika S Rambold; Jennifer Lippincott-Schwartz
Journal:  Cell Cycle       Date:  2011-12-01       Impact factor: 4.534

4.  Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.

Authors:  Seung Beom Hong; Byeong-Won Kim; Kyung-Eun Lee; Se Woong Kim; Hyesung Jeon; Joon Kim; Hyun Kyu Song
Journal:  Nat Struct Mol Biol       Date:  2011-11-06       Impact factor: 15.369

Review 5.  Role of plant autophagy in stress response.

Authors:  Shaojie Han; Bingjie Yu; Yan Wang; Yule Liu
Journal:  Protein Cell       Date:  2011-11-06       Impact factor: 14.870

Review 6.  Patterns of [PSI (+) ] aggregation allow insights into cellular organization of yeast prion aggregates.

Authors:  Jens Tyedmers
Journal:  Prion       Date:  2012-07-01       Impact factor: 3.931

Review 7.  The peroxisome: an update on mysteries.

Authors:  Markus Islinger; Sandra Grille; H Dariush Fahimi; Michael Schrader
Journal:  Histochem Cell Biol       Date:  2012-03-14       Impact factor: 4.304

8.  Two-site recognition of phosphatidylinositol 3-phosphate by PROPPINs in autophagy.

Authors:  Sulochanadevi Baskaran; Michael J Ragusa; Evzen Boura; James H Hurley
Journal:  Mol Cell       Date:  2012-06-14       Impact factor: 17.970

9.  Trs20 is required for TRAPP III complex assembly at the PAS and its function in autophagy.

Authors:  David Taussig; Zhanna Lipatova; Nava Segev
Journal:  Traffic       Date:  2014-01-14       Impact factor: 6.215

10.  Structural insights into the ubiquitin recognition by OPTN (optineurin) and its regulation by TBK1-mediated phosphorylation.

Authors:  Faxiang Li; Daichao Xu; Yingli Wang; Zixuan Zhou; Jianping Liu; Shichen Hu; Yukang Gong; Junying Yuan; Lifeng Pan
Journal:  Autophagy       Date:  2018-02-02       Impact factor: 16.016

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