Literature DB >> 19490972

TREAT Asia Quality Assessment Scheme (TAQAS) to standardize the outcome of HIV genotypic resistance testing in a group of Asian laboratories.

Sally Land1, Philip Cunningham, Jialun Zhou, Kevin Frost, David Katzenstein, Rami Kantor, Yi-Ming Arthur Chen, Shinichi Oka, Allison DeLong, David Sayer, Jeffery Smith, Elizabeth M Dax, Matthew Law.   

Abstract

The TREAT Asia (Therapeutics, Research, Education, and AIDS Training in Asia) Network is building capacity for Human Immunodeficiency Virus Type-1 (HIV-1) drug resistance testing in the region. The objective of the TREAT Asia Quality Assessment Scheme - designated TAQAS - is to standardize HIV-1 genotypic resistance testing (HIV genotyping) among laboratories to permit rigorous comparison of results from different clinics and testing centres. TAQAS has evaluated three panels of HIV-1-positive plasma from clinical material or low-passage, culture supernatant for up to 10 Asian laboratories. Laboratory participants used their standard protocols to perform HIV genotyping. Assessment was in comparison to a target genotype derived from all participants and the reference laboratory's result. Agreement between most participants at the edited nucleotide sequence level was high (>98%). Most participants performed to the reference laboratory standard in detection of drug resistance mutations (DRMs). However, there was variation in the detection of nucleotide mixtures (0-83%) and a significant correlation with the detection of DRMs (p<0.01). Interpretation of antiretroviral resistance showed approximately 70% agreement among participants when different interpretation systems were used but >90% agreement with a common interpretation system, within the Stanford University Drug Resistance Database. Using the principles of external quality assessment and a reference laboratory, TAQAS has demonstrated high quality HIV genotyping results from Asian laboratories.

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Year:  2009        PMID: 19490972      PMCID: PMC2863146          DOI: 10.1016/j.jviromet.2009.03.016

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.623


  31 in total

1.  HIV-1 protease and reverse transcriptase mutation patterns responsible for discordances between genotypic drug resistance interpretation algorithms.

Authors:  Jaideep Ravela; Bradley J Betts; Francoise Brun-Vézinet; Anne-Mieke Vandamme; Diane Descamps; Kristel van Laethem; Kate Smith; Jonathan M Schapiro; Dean L Winslow; Caroline Reid; Robert W Shafer
Journal:  J Acquir Immune Defic Syndr       Date:  2003-05-01       Impact factor: 3.731

2.  Results of the 2001 AcroMetrix HIV-1 resistance proficiency program.

Authors:  Paul D Neuwald; Maria B Funelas; John P DelCarmen; Arthur W Raybold; Paul A Jorgensen
Journal:  J Clin Virol       Date:  2002-12       Impact factor: 3.168

3.  Quality assessment program for genotypic antiretroviral testing improves detection of drug resistance mutations.

Authors:  D C Sayer; S Land; L Gizzarelli; M French; G Hales; S Emery; F T Christiansen; E M Dax
Journal:  J Clin Microbiol       Date:  2003-01       Impact factor: 5.948

4.  Sources and magnitude of intralaboratory variability in a sequence-based genotypic assay for human immunodeficiency virus type 1 drug resistance.

Authors:  R A Galli; B Sattha; B Wynhoven; M V O'Shaughnessy; P R Harrigan
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

Review 5.  Clinical implications of HIV drug resistance to nucleoside and nucleotide reverse transcriptase inhibitors.

Authors:  Anna Maria Geretti
Journal:  AIDS Rev       Date:  2006 Oct-Dec       Impact factor: 2.500

6.  Interlaboratory concordance of DNA sequence analysis to detect reverse transcriptase mutations in HIV-1 proviral DNA. ACTG Sequencing Working Group. AIDS Clinical Trials Group.

Authors:  L M Demeter; R D'Aquila; O Weislow; E Lorenzo; A Erice; J Fitzgibbon; R Shafer; D Richman; T M Howard; Y Zhao; E Fisher; D Huang; D Mayers; S Sylvester; M Arens; K Sannerud; S Rasheed; V Johnson; D Kuritzkes; P Reichelderfer; A Japour
Journal:  J Virol Methods       Date:  1998-11       Impact factor: 2.014

7.  Underestimation of HIV type 1 drug resistance mutations: results from the ENVA-2 genotyping proficiency program.

Authors:  Rob Schuurman; Donald Brambilla; Tom de Groot; Diana Huang; Sally Land; James Bremer; Ireen Benders; Charles A B Boucher
Journal:  AIDS Res Hum Retroviruses       Date:  2002-03-01       Impact factor: 2.205

Review 8.  Genotypic testing for human immunodeficiency virus type 1 drug resistance.

Authors:  Robert W Shafer
Journal:  Clin Microbiol Rev       Date:  2002-04       Impact factor: 26.132

9.  Evaluation of the editing process in human immunodeficiency virus type 1 genotyping.

Authors:  Diana D Huang; Susan H Eshleman; Donald J Brambilla; Paul E Palumbo; James W Bremer
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

10.  Quality control trial for human immunodeficiency virus type 1 drug resistance testing using clinical samples reveals problems with detecting minority species and interpretation of test results.

Authors:  Klaus Korn; Heide Reil; Hauke Walter; Barbara Schmidt
Journal:  J Clin Microbiol       Date:  2003-08       Impact factor: 5.948

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  17 in total

1.  Sequence quality analysis tool for HIV type 1 protease and reverse transcriptase.

Authors:  Allison K Delong; Mingham Wu; Diane Bennett; Neil Parkin; Zhijin Wu; Joseph W Hogan; Rami Kantor
Journal:  AIDS Res Hum Retroviruses       Date:  2011-10-26       Impact factor: 2.205

2.  Transmitted drug resistance and antiretroviral treatment outcomes in non-subtype B HIV-1-infected patients in South East Asia.

Authors:  Praphan Phanuphak; Sunee Sirivichayakul; Awachana Jiamsakul; Somnuek Sungkanuparph; Nagalingeswaran Kumarasamy; Man Po Lee; Thira Sirisanthana; Pacharee Kantipong; Christopher Lee; Adeeba Kamarulzaman; Mahiran Mustafa; Rossana Ditangco; Tuti Merati; Winai Ratanasuwan; Thida Singtoroj; Rami Kantor
Journal:  J Acquir Immune Defic Syndr       Date:  2014-05-01       Impact factor: 3.731

3.  Global analysis of sequence diversity within HIV-1 subtypes across geographic regions.

Authors:  Austin Huang; Joseph W Hogan; Sorin Istrail; Allison Delong; David A Katzenstein; Rami Kantor
Journal:  Future Virol       Date:  2012-05       Impact factor: 1.831

4.  HIV-1 drug resistance mutations among antiretroviral-naive HIV-1-infected patients in Asia: results from the TREAT Asia Studies to Evaluate Resistance-Monitoring Study.

Authors:  Somnuek Sungkanuparph; Rebecca Oyomopito; Sunee Sirivichayakul; Thira Sirisanthana; Patrick C K Li; Pacharee Kantipong; Christopher K C Lee; Adeeba Kamarulzaman; Liesl Messerschmidt; Matthew G Law; Praphan Phanuphak
Journal:  Clin Infect Dis       Date:  2011-04-15       Impact factor: 9.079

5.  Japanese external quality assessment program to standardize HIV-1 drug-resistance testing (JEQS2010 program) using in vitro transcribed RNA as reference material.

Authors:  Shigeru Yoshida; Junko Hattori; Masakazu Matsuda; Kiyomi Okada; Yukumasa Kazuyama; Osamu Hashimoto; Shiro Ibe; Shin-ichi Fujisawa; Hitoshi Chiba; Masashi Tatsumi; Shingo Kato; Wataru Sugiura
Journal:  AIDS Res Hum Retroviruses       Date:  2014-12-03       Impact factor: 2.205

6.  Comparisons of Primary HIV-1 Drug Resistance between Recent and Chronic HIV-1 Infection within a Sub-Regional Cohort of Asian Patients.

Authors:  Sasisopin Kiertiburanakul; Romanee Chaiwarith; Sunee Sirivichayakul; Rossana Ditangco; Awachana Jiamsakul; Patrick C K Li; Pacharee Kantipong; Christopher Lee; Winai Ratanasuwan; Adeeba Kamarulzaman; Annette H Sohn; Somnuek Sungkanuparph
Journal:  PLoS One       Date:  2013-06-27       Impact factor: 3.240

7.  Cohort profile: The PharmAccess African (PASER-M) and the TREAT Asia (TASER-M) monitoring studies to evaluate resistance--HIV drug resistance in sub-Saharan Africa and the Asia-Pacific.

Authors:  Raph L Hamers; Rebecca Oyomopito; Cissy Kityo; Praphan Phanuphak; Margaret Siwale; Somnuek Sungkanuparph; Francesca Conradie; Nagalingeswaran Kumarasamy; Mariette E Botes; Thira Sirisanthana; Saade Abdallah; Patrick C K Li; Nicoletta Ngorima; Pacharee Kantipong; Akin Osibogun; Christopher K C Lee; Wendy S Stevens; Adeeba Kamarulzaman; Inge Derdelinckx; Yi-Ming Arthur Chen; Rob Schuurman; Michèle van Vugt; Tobias F Rinke de Wit
Journal:  Int J Epidemiol       Date:  2010-11-10       Impact factor: 7.196

8.  HIV multi-drug resistance at first-line antiretroviral failure and subsequent virological response in Asia.

Authors:  Awachana Jiamsakul; Somnuek Sungkanuparph; Matthew Law; Rami Kantor; Jutarat Praparattanapan; Patrick C K Li; Praphan Phanuphak; Tuti Merati; Winai Ratanasuwan; Christopher K C Lee; Rossana Ditangco; Mahiran Mustafa; Thida Singtoroj; Sasisopin Kiertiburanakul
Journal:  J Int AIDS Soc       Date:  2014-08-19       Impact factor: 5.396

9.  Comparison of predicted susceptibility between genotype and virtual phenotype HIV drug resistance interpretation systems among treatment-naive HIV-infected patients in Asia: TASER-M cohort analysis.

Authors:  Awachana Jiamsakul; Rami Kantor; Patrick C K Li; Sunee Sirivichayakul; Thira Sirisanthana; Pacharee Kantipong; Christopher K C Lee; Adeeba Kamarulzaman; Winai Ratanasuwan; Rossana Ditangco; Thida Singtoroj; Somnuek Sungkanuparph
Journal:  BMC Res Notes       Date:  2012-10-24

10.  Capacity building and predictors of success for HIV-1 drug resistance testing in the Asia-Pacific region and Africa.

Authors:  Sally Land; Julian Zhou; Philip Cunningham; Annette H Sohn; Thida Singtoroj; David Katzenstein; Marita Mann; David Sayer; Rami Kantor
Journal:  J Int AIDS Soc       Date:  2013-07-10       Impact factor: 5.396

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