Literature DB >> 19490919

A quantitative model of the effect of unreplicated DNA on cell cycle progression in frog egg extracts.

Jason Zwolak1, Nassiba Adjerid, Elife Z Bagci, John J Tyson, Jill C Sible.   

Abstract

A critical goal in cell biology is to develop a systems-level perspective of eukaryotic cell cycle controls. Among these controls, a complex signaling network (called 'checkpoints') arrests progression through the cell cycle when there is a threat to genomic integrity such as unreplicated or damaged DNA. Understanding the regulatory principles of cell cycle checkpoints is important because loss of checkpoint regulation may be a requisite step on the roadway to cancer. Mathematical modeling has proved to be a useful guide to cell cycle regulation by revealing the importance of bistability, hysteresis and time lags in governing cell cycle transitions and checkpoint mechanisms. In this report, we propose a mathematical model of the frog egg cell cycle including effects of unreplicated DNA on progression into mitosis. By a stepwise approach utilizing parameter estimation tools, we build a model that is grounded in fundamental behaviors of the cell cycle engine (hysteresis and time lags), includes new elements in the signaling network (Myt1 and Chk1 kinases), and fits a large and diverse body of data from the experimental literature. The model provides a validated framework upon which to build additional aspects of the cell cycle checkpoint signaling network, including those control signals in the mammalian cell cycle that are commonly mutated in cancer.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19490919      PMCID: PMC2763306          DOI: 10.1016/j.jtbi.2009.05.018

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  38 in total

Review 1.  The hallmarks of cancer.

Authors:  D Hanahan; R A Weinberg
Journal:  Cell       Date:  2000-01-07       Impact factor: 41.582

Review 2.  Toward maintaining the genome: DNA damage and replication checkpoints.

Authors:  Kara A Nyberg; Rhett J Michelson; Charles W Putnam; Ted A Weinert
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

3.  Molecular biology. Untangling checkpoints.

Authors:  Noriyuki Sagata
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 4.  Molecular anatomy of the DNA damage and replication checkpoints.

Authors:  Jun Qin; Lei Li
Journal:  Radiat Res       Date:  2003-02       Impact factor: 2.841

5.  A requirement for replication in activation of the ATR-dependent DNA damage checkpoint.

Authors:  Patrick J Lupardus; Tony Byun; Muh-Ching Yee; Mohammad Hekmat-Nejad; Karlene A Cimprich
Journal:  Genes Dev       Date:  2002-09-15       Impact factor: 11.361

6.  Dephosphorylation of the inhibitory phosphorylation site S287 in Xenopus Cdc25C by protein phosphatase-2A is inhibited by 14-3-3 binding.

Authors:  James R A Hutchins; Dina Dikovskaya; Paul R Clarke
Journal:  FEBS Lett       Date:  2002-09-25       Impact factor: 4.124

7.  Positive regulation of Wee1 by Chk1 and 14-3-3 proteins.

Authors:  J Lee; A Kumagai; W G Dunphy
Journal:  Mol Biol Cell       Date:  2001-03       Impact factor: 4.138

8.  Xenopus ATR is a replication-dependent chromatin-binding protein required for the DNA replication checkpoint.

Authors:  M Hekmat-Nejad; Z You; M C Yee; J W Newport; K A Cimprich
Journal:  Curr Biol       Date:  2000 Dec 14-28       Impact factor: 10.834

9.  Modeling molecular regulatory networks with JigCell and PET.

Authors:  Clifford A Shaffer; Jason W Zwolak; Ranjit Randhawa; John J Tyson
Journal:  Methods Mol Biol       Date:  2009

10.  Chk1 is activated transiently and targets Cdc25A for degradation at the Xenopus midblastula transition.

Authors:  Ken Shimuta; Nobushige Nakajo; Katsuhiro Uto; Yoshimasa Hayano; Kenji Okazaki; Noriyuki Sagata
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

View more
  3 in total

Review 1.  Triple-negative breast cancer: present challenges and new perspectives.

Authors:  Franca Podo; Lutgarde M C Buydens; Hadassa Degani; Riet Hilhorst; Edda Klipp; Ingrid S Gribbestad; Sabine Van Huffel; Hanneke W M van Laarhoven; Jan Luts; Daniel Monleon; Geert J Postma; Nicole Schneiderhan-Marra; Filippo Santoro; Hans Wouters; Hege G Russnes; Therese Sørlie; Elda Tagliabue; Anne-Lise Børresen-Dale
Journal:  Mol Oncol       Date:  2010-04-24       Impact factor: 6.603

2.  Mathematical modeling of fission yeast Schizosaccharomyces pombe cell cycle: exploring the role of multiple phosphatases.

Authors:  P Anbumathi; Sharad Bhartiya; K V Venkatesh
Journal:  Syst Synth Biol       Date:  2011-12-08

3.  A data-driven, mathematical model of mammalian cell cycle regulation.

Authors:  Michael C Weis; Jayant Avva; James W Jacobberger; Sree N Sreenath
Journal:  PLoS One       Date:  2014-05-13       Impact factor: 3.240

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.