Literature DB >> 19483771

Survey of genome size in 28 hydrothermal vent species covering 10 families.

Eric Bonnivard1, Olivier Catrice, Juliette Ravaux, Spencer C Brown, Dominique Higuet.   

Abstract

Knowledge of genome size is a useful and necessary prerequisite for the development of many genomic resources. To better understand the origins and effects of DNA gains and losses among species, it is important to collect data from a broad taxonomic base, but also from particular ecosystems. Oceanic thermal vents are an interesting model to investigate genome size in very unstable environments. Here we provide data estimated by flow cytometry for 28 vent-living species among the most representative from different hydrothermal vents. We also report the genome size of closely related coastal decapods. Haploid C-values were compared with those previously reported for species from corresponding orders or infraorders. This is the first broad survey of 2C values in vent organisms. Contrary to expectations, it shows that certain hydrothermal vent species have particularly large genomes. The vent squat lobster Munidopsis recta has the largest genome yet reported for any anomuran: 2C=31.1 pg=30.4x10(9) bp. In several groups, such as Brachyura, Phyllodocida, and Veneroida, vent species have genomes that clearly rank at the high end of published values for each group. We also describe the highest DNA content yet recorded for the Brachyura (coastal crabs Xantho pilipes and Necora puber). Finally, analysis of genome size variation across populations revealed unexpected intraspecific variation in the vent shrimp Mirocaris fortunata that could not be attributed simply to ploidy changes.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19483771     DOI: 10.1139/g09-027

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  11 in total

Review 1.  A guided tour of large genome size in animals: what we know and where we are heading.

Authors:  France Dufresne; Nicholas Jeffery
Journal:  Chromosome Res       Date:  2011-10       Impact factor: 5.239

2.  An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.

Authors:  L Aznar-Cormano; J Brisset; T-Y Chan; L Corbari; N Puillandre; J Utge; M Zbinden; D Zuccon; S Samadi
Journal:  Genetica       Date:  2015-02-14       Impact factor: 1.082

3.  Comparative transcriptome analysis of Rimicaris sp. reveals novel molecular features associated with survival in deep-sea hydrothermal vent.

Authors:  Jian Zhang; Qing-Lei Sun; Zhen-Dong Luan; Chao Lian; Li Sun
Journal:  Sci Rep       Date:  2017-05-17       Impact factor: 4.379

4.  Insights into metazoan evolution from Alvinella pompejana cDNAs.

Authors:  Nicolas Gagnière; Didier Jollivet; Isabelle Boutet; Yann Brélivet; Didier Busso; Corinne Da Silva; Françoise Gaill; Dominique Higuet; Stéphane Hourdez; Bernard Knoops; François Lallier; Emmanuelle Leize-Wagner; Jean Mary; Dino Moras; Emmanuel Perrodou; Jean-François Rees; Béatrice Segurens; Bruce Shillito; Arnaud Tanguy; Jean-Claude Thierry; Jean Weissenbach; Patrick Wincker; Franck Zal; Olivier Poch; Odile Lecompte
Journal:  BMC Genomics       Date:  2010-11-16       Impact factor: 3.969

5.  Phylogeny and New Classification of Hydrothermal Vent and Seep Shrimps of the Family Alvinocarididae (Decapoda).

Authors:  Alexander L Vereshchaka; Dmitry N Kulagin; Anastasia A Lunina
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

6.  Production of WW males lacking the masculine Z chromosome and mining the Macrobrachium rosenbergii genome for sex-chromosomes.

Authors:  Tom Levy; Ohad Rosen; Rivka Manor; Shahar Dotan; Dudu Azulay; Anna Abramov; Menachem Y Sklarz; Vered Chalifa-Caspi; Kobi Baruch; Assaf Shechter; Amir Sagi
Journal:  Sci Rep       Date:  2019-08-27       Impact factor: 4.379

7.  LTR-retrotransposons in R. exoculata and other crustaceans: the outstanding success of GalEa-like copia elements.

Authors:  Mathieu Piednoël; Tifenn Donnart; Caroline Esnault; Paula Graça; Dominique Higuet; Eric Bonnivard
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

8.  Genome Sequences of Marine Shrimp Exopalaemon carinicauda Holthuis Provide Insights into Genome Size Evolution of Caridea.

Authors:  Jianbo Yuan; Yi Gao; Xiaojun Zhang; Jiankai Wei; Chengzhang Liu; Fuhua Li; Jianhai Xiang
Journal:  Mar Drugs       Date:  2017-07-05       Impact factor: 5.118

9.  The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

Authors:  Claude Rispe; Fabrice Legeai; Paul D Nabity; Rosa Fernández; Arinder K Arora; Patrice Baa-Puyoulet; Celeste R Banfill; Leticia Bao; Miquel Barberà; Maryem Bouallègue; Anthony Bretaudeau; Jennifer A Brisson; Federica Calevro; Pierre Capy; Olivier Catrice; Thomas Chertemps; Carole Couture; Laurent Delière; Angela E Douglas; Keith Dufault-Thompson; Paula Escuer; Honglin Feng; Astrid Forneck; Toni Gabaldón; Roderic Guigó; Frédérique Hilliou; Silvia Hinojosa-Alvarez; Yi-Min Hsiao; Sylvie Hudaverdian; Emmanuelle Jacquin-Joly; Edward B James; Spencer Johnston; Benjamin Joubard; Gaëlle Le Goff; Gaël Le Trionnaire; Pablo Librado; Shanlin Liu; Eric Lombaert; Hsiao-Ling Lu; Martine Maïbèche; Mohamed Makni; Marina Marcet-Houben; David Martínez-Torres; Camille Meslin; Nicolas Montagné; Nancy A Moran; Daciana Papura; Nicolas Parisot; Yvan Rahbé; Mélanie Ribeiro Lopes; Aida Ripoll-Cladellas; Stéphanie Robin; Céline Roques; Pascale Roux; Julio Rozas; Alejandro Sánchez-Gracia; Jose F Sánchez-Herrero; Didac Santesmasses; Iris Scatoni; Rémy-Félix Serre; Ming Tang; Wenhua Tian; Paul A Umina; Manuella van Munster; Carole Vincent-Monégat; Joshua Wemmer; Alex C C Wilson; Ying Zhang; Chaoyang Zhao; Jing Zhao; Serena Zhao; Xin Zhou; François Delmotte; Denis Tagu
Journal:  BMC Biol       Date:  2020-07-23       Impact factor: 7.431

10.  Chromosome-level genome assembly of Paralithodes platypus provides insights into evolution and adaptation of king crabs.

Authors:  Boping Tang; Zhongkai Wang; Qiuning Liu; Zhengfei Wang; Yandong Ren; Huayun Guo; Tingting Qi; Yuetian Li; Huabin Zhang; Senhao Jiang; Baoming Ge; Fujun Xuan; Yue Sun; Shusheng She; Tin Yam Chan; Zhongli Sha; Hui Jiang; Haorong Li; Wei Jiang; Yanli Qin; Kun Wang; Qiang Qiu; Wen Wang; Xinzheng Li; Ngan Kee Ng; Daizhen Zhang; Yongxin Li
Journal:  Mol Ecol Resour       Date:  2020-10-22       Impact factor: 7.090

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.