Literature DB >> 19483146

Monitoring compound integrity with cytochrome P450 assays and qHTS.

Ryan MacArthur1, William Leister, Henrike Veith, Paul Shinn, Noel Southall, Christopher P Austin, James Inglese, Douglas S Auld.   

Abstract

The authors describe how room temperature storage of a 1120-member compound library prepared in either DMSO or in a hydrated-DMSO/water (67/33) mixture affects the reproducibility of potency values as monitored using cytochrome P450 1A2 and 2D6 isozyme assays. The bioluminescent assays showed Z' factors of 0.71 and 0.62, with 17% and 32% of the library found as active against the CYP 1A2 and 2D6 isozymes, respectively. The authors tested the library using quantitative high-throughput screening to generate potency values for every library member, which was measured at 7 time intervals spanning 37 weeks. They calculated the minimum significant ratio (MSR) from these potency values at each time interval and found that for the library stored in DMSO, the CYP 1A2 and 2D6 assay MSRs progressed from approximately 2.0 to 5.0. The hydrated conditions showed similar performance in both MSR progression and analytical quality control results. Based on this study, the authors recommend that DMSO samples be stored in 1536-well plates for <4 months at room temperature. Furthermore, the study illustrates the degree and time scale of apparent compound potency changes due to sample storage.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19483146      PMCID: PMC3430136          DOI: 10.1177/1087057109336954

Source DB:  PubMed          Journal:  J Biomol Screen        ISSN: 1087-0571


  27 in total

1.  Studies of the relative stability of TFA adducts vs non-TFA analogues for combinatorial chemistry library members in DMSO in a repository compound collection.

Authors:  Jill Hochlowski; Xueheng Cheng; Daryl Sauer; Stevan Djuric
Journal:  J Comb Chem       Date:  2003 Jul-Aug

2.  The effect of room-temperature storage on the stability of compounds in DMSO.

Authors:  Barbara A Kozikowski; Thomas M Burt; Debra A Tirey; Lisa E Williams; Barbara R Kuzmak; David T Stanton; Kenneth L Morand; Sandra L Nelson
Journal:  J Biomol Screen       Date:  2003-04

3.  In situ DMSO hydration measurements of HTS compound libraries.

Authors:  R Ellson; R Stearns; M Mutz; C Brown; B Browning; D Harris; S Qureshi; J Shieh; D Wold
Journal:  Comb Chem High Throughput Screen       Date:  2005-09       Impact factor: 1.339

4.  Quantitative high-throughput screening: a titration-based approach that efficiently identifies biological activities in large chemical libraries.

Authors:  James Inglese; Douglas S Auld; Ajit Jadhav; Ronald L Johnson; Anton Simeonov; Adam Yasgar; Wei Zheng; Christopher P Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

5.  Investigation of 3 industry-wide applied storage conditions for compound libraries.

Authors:  Pierre E Ilouga; Dirk Winkler; Christian Kirchhoff; Bernd Schierholz; Julian Wölcke
Journal:  J Biomol Screen       Date:  2006-11-12

6.  The minimum significant ratio: a statistical parameter to characterize the reproducibility of potency estimates from concentration-response assays and estimation by replicate-experiment studies.

Authors:  Brian J Eastwood; Mark W Farmen; Philip W Iversen; Trelia J Craft; Jeffrey K Smallwood; Kim E Garbison; Neil W Delapp; Gerald F Smith
Journal:  J Biomol Screen       Date:  2006-02-20

7.  Compound Management for Quantitative High-Throughput Screening.

Authors:  Adam Yasgar; Paul Shinn; Ajit Jadhav; Douglas Auld; Sam Michael; Wei Zheng; Christopher P Austin; James Inglese; Anton Simeonov
Journal:  JALA Charlottesv Va       Date:  2008-04

Review 8.  Luminogenic cytochrome P450 assays.

Authors:  James J Cali; Dongping Ma; Mary Sobol; Daniel J Simpson; Susan Frackman; Troy D Good; William J Daily; David Liu
Journal:  Expert Opin Drug Metab Toxicol       Date:  2006-08       Impact factor: 4.481

9.  Nanoliter dispensing for uHTS using pin tools.

Authors:  Patrick H Cleveland; Patricia J Koutz
Journal:  Assay Drug Dev Technol       Date:  2005-04       Impact factor: 1.738

10.  Examination of edge effects with different storage conditions of preplated dimethyl sulfoxide nanospots in ChemLib 1,536- and 3,456-well assay-ready plates.

Authors:  Benjamin A Turner; Brad P Evans; Tania T Pearson; Timothy K Braden; Scott C Wise
Journal:  Assay Drug Dev Technol       Date:  2008-12       Impact factor: 1.738

View more
  10 in total

1.  Comparison of bioluminescent kinase assays using substrate depletion and product formation.

Authors:  Cordelle Tanega; Min Shen; Bryan T Mott; Craig J Thomas; Ryan MacArthur; James Inglese; Douglas S Auld
Journal:  Assay Drug Dev Technol       Date:  2009-12       Impact factor: 1.738

2.  Detecting Secretory Proteins by Acoustic Droplet Ejection in Multiplexed High-Throughput Applications.

Authors:  Michael J Iannotti; Ryan MacArthur; Richard Jones; Dingyin Tao; Ilyas Singeç; Sam Michael; James Inglese
Journal:  ACS Chem Biol       Date:  2019-02-14       Impact factor: 5.100

3.  The Tox21 10K Compound Library: Collaborative Chemistry Advancing Toxicology.

Authors:  Ann M Richard; Ruili Huang; Suramya Waidyanatha; Paul Shinn; Bradley J Collins; Inthirany Thillainadarajah; Christopher M Grulke; Antony J Williams; Ryan R Lougee; Richard S Judson; Keith A Houck; Mahmoud Shobair; Chihae Yang; James F Rathman; Adam Yasgar; Suzanne C Fitzpatrick; Anton Simeonov; Russell S Thomas; Kevin M Crofton; Richard S Paules; John R Bucher; Christopher P Austin; Robert J Kavlock; Raymond R Tice
Journal:  Chem Res Toxicol       Date:  2020-11-03       Impact factor: 3.739

Review 4.  The future of toxicity testing: a focus on in vitro methods using a quantitative high-throughput screening platform.

Authors:  Sunita J Shukla; Ruili Huang; Christopher P Austin; Menghang Xia
Journal:  Drug Discov Today       Date:  2010-08-11       Impact factor: 7.851

5.  The NCGC pharmaceutical collection: a comprehensive resource of clinically approved drugs enabling repurposing and chemical genomics.

Authors:  Ruili Huang; Noel Southall; Yuhong Wang; Adam Yasgar; Paul Shinn; Ajit Jadhav; Dac-Trung Nguyen; Christopher P Austin
Journal:  Sci Transl Med       Date:  2011-04-27       Impact factor: 17.956

6.  Nanofibrous PLGA electrospun scaffolds modified with type I collagen influence hepatocyte function and support viability in vitro.

Authors:  Jessica H Brown; Prativa Das; Michael D DiVito; David Ivancic; Lay Poh Tan; Jason A Wertheim
Journal:  Acta Biomater       Date:  2018-02-15       Impact factor: 8.947

7.  Predicting Mouse Liver Microsomal Stability with "Pruned" Machine Learning Models and Public Data.

Authors:  Alexander L Perryman; Thomas P Stratton; Sean Ekins; Joel S Freundlich
Journal:  Pharm Res       Date:  2015-09-28       Impact factor: 4.200

8.  Selecting, Acquiring, and Using Small Molecule Libraries for High-Throughput Screening.

Authors:  Sivaraman Dandapani; Gerard Rosse; Noel Southall; Joseph M Salvino; Craig J Thomas
Journal:  Curr Protoc Chem Biol       Date:  2012-09-01

9.  Open Source Bayesian Models. 1. Application to ADME/Tox and Drug Discovery Datasets.

Authors:  Alex M Clark; Krishna Dole; Anna Coulon-Spektor; Andrew McNutt; George Grass; Joel S Freundlich; Robert C Reynolds; Sean Ekins
Journal:  J Chem Inf Model       Date:  2015-06-03       Impact factor: 4.956

10.  Experimental and Chemoinformatics Study of Tautomerism in a Database of Commercially Available Screening Samples.

Authors:  Laura Guasch; Waruna Yapamudiyansel; Megan L Peach; James A Kelley; Joseph J Barchi; Marc C Nicklaus
Journal:  J Chem Inf Model       Date:  2016-10-16       Impact factor: 4.956

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.