Literature DB >> 19483088

Structural and functional analysis of Campylobacter jejuni PseG: a udp-sugar hydrolase from the pseudaminic acid biosynthetic pathway.

Erumbi S Rangarajan1, Ariane Proteau, Qizhi Cui, Susan M Logan, Zhanna Potetinova, Dennis Whitfield, Enrico O Purisima, Miroslaw Cygler, Allan Matte, Traian Sulea, Ian C Schoenhofen.   

Abstract

Flagella of the bacteria Helicobacter pylori and Campylobacter jejuni are important virulence determinants, whose proper assembly and function are dependent upon glycosylation at multiple positions by sialic acid-like sugars, such as 5,7-diacetamido-3,5,7,9-tetradeoxy-l-glycero-l-manno-nonulosonic acid (pseudaminic acid (Pse)). The fourth enzymatic step in the pseudaminic acid pathway, the hydrolysis of UDP-2,4-diacetamido-2,4,6-trideoxy-beta-l-altropyranose to generate 2,4-diacetamido-2,4,6-trideoxy-l-altropyranose, is performed by the nucleotide sugar hydrolase PseG. To better understand the molecular basis of the PseG catalytic reaction, we have determined the crystal structures of C. jejuni PseG in apo-form and as a complex with its UDP product at 1.8 and 1.85 A resolution, respectively. In addition, molecular modeling was utilized to provide insight into the structure of the PseG-substrate complex. This modeling identifies a His(17)-coordinated water molecule as the putative nucleophile and suggests the UDP-sugar substrate adopts a twist-boat conformation upon binding to PseG, enhancing the exposure of the anomeric bond cleaved and favoring inversion at C-1. Furthermore, based on these structures a series of amino acid substitution derivatives were constructed, altering residues within the active site, and each was kinetically characterized to examine its contribution to PseG catalysis. In conjunction with structural comparisons, the almost complete inactivation of the PseG H17F and H17L derivatives suggests that His(17) functions as an active site base, thereby activating the nucleophilic water molecule for attack of the anomeric C-O bond of the UDP-sugar. As the PseG structure reveals similarity to those of glycosyltransferase family-28 members, in particular that of Escherichia coli MurG, these findings may also be of relevance for the mechanistic understanding of this important enzyme family.

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Year:  2009        PMID: 19483088      PMCID: PMC2742864          DOI: 10.1074/jbc.M109.012351

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  69 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The 1.9 A crystal structure of Escherichia coli MurG, a membrane-associated glycosyltransferase involved in peptidoglycan biosynthesis.

Authors:  S Ha; D Walker; Y Shi; S Walker
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

3.  The implementation of a fast and accurate QM/MM potential method in Amber.

Authors:  Ross C Walker; Michael F Crowley; David A Case
Journal:  J Comput Chem       Date:  2008-05       Impact factor: 3.376

4.  Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.

Authors:  J O Wrabl; N V Grishin
Journal:  J Mol Biol       Date:  2001-11-30       Impact factor: 5.469

5.  Functional characterization of dehydratase/aminotransferase pairs from Helicobacter and Campylobacter: enzymes distinguishing the pseudaminic acid and bacillosamine biosynthetic pathways.

Authors:  Ian C Schoenhofen; David J McNally; Evgeny Vinogradov; Dennis Whitfield; N Martin Young; Scott Dick; Warren W Wakarchuk; Jean-Robert Brisson; Susan M Logan
Journal:  J Biol Chem       Date:  2005-11-11       Impact factor: 5.157

6.  Structural and functional characterization of PseC, an aminotransferase involved in the biosynthesis of pseudaminic acid, an essential flagellar modification in Helicobacter pylori.

Authors:  Ian C Schoenhofen; Vladimir V Lunin; Jean-Philippe Julien; Yunge Li; Eunice Ajamian; Allan Matte; Miroslaw Cygler; Jean-Robert Brisson; Annie Aubry; Susan M Logan; Smita Bhatia; Warren W Wakarchuk; N Martin Young
Journal:  J Biol Chem       Date:  2006-01-18       Impact factor: 5.157

7.  Kinetic and magnetic resonance studies of the role of metal ions in the mechanism of Escherichia coli GDP-mannose mannosyl hydrolase, an unusual nudix enzyme.

Authors:  Patricia M Legler; H Caroline Lee; Jack Peisach; Albert S Mildvan
Journal:  Biochemistry       Date:  2002-04-09       Impact factor: 3.162

8.  Crystal structure of the MurG:UDP-GlcNAc complex reveals common structural principles of a superfamily of glycosyltransferases.

Authors:  Yanan Hu; Lan Chen; Sha Ha; Ben Gross; Brian Falcone; Deborah Walker; Maryam Mokhtarzadeh; Suzanne Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-21       Impact factor: 11.205

9.  Crystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation.

Authors:  Alejandro Buschiazzo; Juan E Ugalde; Marcelo E Guerin; William Shepard; Rodolfo A Ugalde; Pedro M Alzari
Journal:  EMBO J       Date:  2004-07-22       Impact factor: 11.598

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  9 in total

Review 1.  Flagellin glycosylation with pseudaminic acid in Campylobacter and Helicobacter: prospects for development of novel therapeutics.

Authors:  Abu Iftiaf Md Salah Ud-Din; Anna Roujeinikova
Journal:  Cell Mol Life Sci       Date:  2017-10-27       Impact factor: 9.261

2.  Small-molecule inhibitors of the pseudaminic acid biosynthetic pathway: targeting motility as a key bacterial virulence factor.

Authors:  Robert Ménard; Ian C Schoenhofen; Limei Tao; Annie Aubry; Patrice Bouchard; Christopher W Reid; Paule Lachance; Susan M Twine; Kelly M Fulton; Qizhi Cui; Hervé Hogues; Enrico O Purisima; Traian Sulea; Susan M Logan
Journal:  Antimicrob Agents Chemother       Date:  2014-09-29       Impact factor: 5.191

3.  Carbohydrate force fields.

Authors:  B Lachele Foley; Matthew B Tessier; Robert J Woods
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2012-07

4.  Variability in docking success rates due to dataset preparation.

Authors:  Christopher R Corbeil; Christopher I Williams; Paul Labute
Journal:  J Comput Aided Mol Des       Date:  2012-05-08       Impact factor: 3.686

5.  Comparative Genomics Reveal That Host-Innate Immune Responses Influence the Clinical Prevalence of Legionella pneumophila Serogroups.

Authors:  Mohammad Adil Khan; Natalie Knox; Akriti Prashar; David Alexander; Mena Abdel-Nour; Carla Duncan; Patrick Tang; Hajera Amatullah; Claudia C Dos Santos; Nathalie Tijet; Donald E Low; Christine Pourcel; Gary Van Domselaar; Mauricio Terebiznik; Alexander W Ensminger; Cyril Guyard
Journal:  PLoS One       Date:  2013-06-27       Impact factor: 3.240

Review 6.  The renaissance of bacillosamine and its derivatives: pathway characterization and implications in pathogenicity.

Authors:  Michael J Morrison; Barbara Imperiali
Journal:  Biochemistry       Date:  2014-01-21       Impact factor: 3.162

7.  Tannerella forsythia strains display different cell-surface nonulosonic acids: biosynthetic pathway characterization and first insight into biological implications.

Authors:  Valentin Friedrich; Bettina Janesch; Markus Windwarder; Daniel Maresch; Matthias L Braun; Zoë A Megson; Evgeny Vinogradov; Marie-France Goneau; Ashu Sharma; Friedrich Altmann; Paul Messner; Ian C Schoenhofen; Christina Schäffer
Journal:  Glycobiology       Date:  2017-04-01       Impact factor: 4.313

8.  Expression of sialic acids and other nonulosonic acids in Leptospira.

Authors:  Jessica N Ricaldi; Michael A Matthias; Joseph M Vinetz; Amanda L Lewis
Journal:  BMC Microbiol       Date:  2012-08-01       Impact factor: 3.605

9.  The sps Genes Encode an Original Legionaminic Acid Pathway Required for Crust Assembly in Bacillus subtilis.

Authors:  Thomas Dubois; Frederic Krzewinski; Nao Yamakawa; Christelle Lemy; Audrey Hamiot; Loïc Brunet; Anne-Sophie Lacoste; Yuryi Knirel; Yann Guerardel; Christine Faille
Journal:  mBio       Date:  2020-08-18       Impact factor: 7.867

  9 in total

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