Literature DB >> 19481970

Ionomics: studying the social network of mineral nutrients.

Ivan Baxter1.   

Abstract

The accumulation of a given element is a complex process controlled by a network of gene products critical for uptake, binding, transportation, and sequestration. Many of these genes and physiological processes affect more than one element. Therefore, to understand how elements are regulated, it is necessary to measure as many of the elements contained in a cell, tissue, or organism (the ionome) as possible. The elements that share components of their network vary depending on the species and genotype of the plants that are studied and environment they are grown in. Several recent papers describe high-throughput elemental profiling studies of how the ionome responds to the environment or explores the genetics that control the ionome. When combined with new genotyping technologies, ionomics provides a rapid way to identify genes that control elemental accumulation in plants.

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Year:  2009        PMID: 19481970      PMCID: PMC2701637          DOI: 10.1016/j.pbi.2009.05.002

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  23 in total

1.  Evolutionary control of leaf element composition in plants.

Authors:  Toshihiro Watanabe; Martin R Broadley; Steven Jansen; Philip J White; Jitsuya Takada; Kenichi Satake; Takejiro Takamatsu; Sehat Jaya Tuah; Mitsuru Osaki
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

2.  Purdue ionomics information management system. An integrated functional genomics platform.

Authors:  Ivan Baxter; Mourad Ouzzani; Seza Orcun; Brad Kennedy; Shrinivas S Jandhyala; David E Salt
Journal:  Plant Physiol       Date:  2006-12-22       Impact factor: 8.340

3.  Functional association of Arabidopsis CAX1 and CAX3 is required for normal growth and ion homeostasis.

Authors:  Ning-Hui Cheng; Jon K Pittman; Toshiro Shigaki; Jinesh Lachmansingh; Sherry LeClere; Brett Lahner; David E Salt; Kendal D Hirschi
Journal:  Plant Physiol       Date:  2005-07-29       Impact factor: 8.340

4.  Analysis of sulfur and selenium assimilation in Astragalus plants with varying capacities to accumulate selenium.

Authors:  Thomas G Sors; Danielle R Ellis; Gun Nam Na; Brett Lahner; Sangman Lee; Thomas Leustek; Ingrid J Pickering; David E Salt
Journal:  Plant J       Date:  2005-06       Impact factor: 6.417

5.  Mutations in CAX1 produce phenotypes characteristic of plants tolerant to serpentine soils.

Authors:  H D Bradshaw
Journal:  New Phytol       Date:  2005-07       Impact factor: 10.151

6.  Uptake kinetics of arsenic species in rice plants.

Authors:  Mohammed Joinal Abedin; Jörg Feldmann; Andy A Meharg
Journal:  Plant Physiol       Date:  2002-03       Impact factor: 8.340

7.  Rapid characterization of plant mutants with an altered ion-profile: a case study using Lotus japonicus.

Authors:  Zheng Chen; Toshihiro Watanabe; Takuro Shinano; Keiki Okazaki; Mitsuru Osaki
Journal:  New Phytol       Date:  2009-03       Impact factor: 10.151

Review 8.  Mining iron: iron uptake and transport in plants.

Authors:  Sun A Kim; Mary Lou Guerinot
Journal:  FEBS Lett       Date:  2007-04-25       Impact factor: 4.124

9.  Fractionation of stable iron isotopes in higher plants.

Authors:  Monika Guelke; Friedhelm Von Blanckenburg
Journal:  Environ Sci Technol       Date:  2007-03-15       Impact factor: 9.028

10.  Characterization of the yeast ionome: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae.

Authors:  David J Eide; Suzanne Clark; T Murlidharan Nair; Mathias Gehl; Michael Gribskov; Mary Lou Guerinot; Jeffrey F Harper
Journal:  Genome Biol       Date:  2005-08-30       Impact factor: 13.583

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  49 in total

Review 1.  Systems genetics of mineral metabolism.

Authors:  James C Fleet; Rebecca Replogle; David E Salt
Journal:  J Nutr       Date:  2011-01-26       Impact factor: 4.798

2.  The elements of plant micronutrients.

Authors:  Sabeeha S Merchant
Journal:  Plant Physiol       Date:  2010-10       Impact factor: 8.340

3.  Progress and Promise in using Arabidopsis to Study Adaptation, Divergence, and Speciation.

Authors:  Ben Hunter; Kirsten Bomblies
Journal:  Arabidopsis Book       Date:  2010-09-29

Review 4.  Post-genomics studies of developmental processes in legume seeds.

Authors:  Richard Thompson; Judith Burstin; Karine Gallardo
Journal:  Plant Physiol       Date:  2009-08-12       Impact factor: 8.340

5.  Noise reduction in genome-wide perturbation screens using linear mixed-effect models.

Authors:  Danni Yu; John Danku; Ivan Baxter; Sungjin Kim; Olena K Vatamaniuk; David E Salt; Olga Vitek
Journal:  Bioinformatics       Date:  2011-06-17       Impact factor: 6.937

Review 6.  Genetics- and genomics-based interventions for nutritional enhancement of grain legume crops: status and outlook.

Authors:  Abhishek Bohra; Kanwar L Sahrawat; Shiv Kumar; Rohit Joshi; Ashok K Parihar; Ummed Singh; Deepak Singh; Narendra P Singh
Journal:  J Appl Genet       Date:  2015-01-16       Impact factor: 3.240

Review 7.  Plant nutrition for sustainable development and global health.

Authors:  P J White; P H Brown
Journal:  Ann Bot       Date:  2010-04-29       Impact factor: 4.357

8.  In silico analysis of expression data for identification of genes involved in spatial accumulation of calcium in developing seeds of rice.

Authors:  Anshita Goel; Vikram S Gaur; Sandeep Arora; Sanjay Gupta; Anil Kumar
Journal:  OMICS       Date:  2012-06-26

9.  Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize.

Authors:  Amanda R Durbak; Kimberly A Phillips; Sharon Pike; Malcolm A O'Neill; Jonathan Mares; Andrea Gallavotti; Simon T Malcomber; Walter Gassmann; Paula McSteen
Journal:  Plant Cell       Date:  2014-07-17       Impact factor: 11.277

10.  The boron efflux transporter ROTTEN EAR is required for maize inflorescence development and fertility.

Authors:  Mithu Chatterjee; Zara Tabi; Mary Galli; Simon Malcomber; Amy Buck; Michael Muszynski; Andrea Gallavotti
Journal:  Plant Cell       Date:  2014-07-17       Impact factor: 11.277

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