Literature DB >> 19481161

Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset.

Chris Hinrichs1, Vikas Singh, Lopamudra Mukherjee, Guofan Xu, Moo K Chung, Sterling C Johnson.   

Abstract

Structural and functional brain images are playing an important role in helping us understand the changes associated with neurological disorders such as Alzheimer's disease (AD). Recent efforts have now started investigating their utility for diagnosis purposes. This line of research has shown promising results where methods from machine learning (such as Support Vector Machines) have been used to identify AD-related patterns from images, for use in diagnosing new individual subjects. In this paper, we propose a new framework for AD classification which makes use of the Linear Program (LP) boosting with novel additional regularization based on spatial "smoothness" in 3D image coordinate spaces. The algorithm formalizes the expectation that since the examples for training the classifier are images, the voxels eventually selected for specifying the decision boundary must constitute spatially contiguous chunks, i.e., "regions" must be preferred over isolated voxels. This prior belief turns out to be useful for significantly reducing the space of possible classifiers and leads to substantial benefits in generalization. In our method, the requirement of spatial contiguity (of selected discriminating voxels) is incorporated within the optimization framework directly. Other methods have made use of similar biases as a pre- or post-processing step, however, our model incorporates this emphasis on spatial smoothness directly into the learning step. We report on extensive evaluations of our algorithm on MR and FDG-PET images from the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and discuss the relationship of the classification output with the clinical and cognitive biomarker data available within ADNI.

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Year:  2009        PMID: 19481161      PMCID: PMC2773131          DOI: 10.1016/j.neuroimage.2009.05.056

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  33 in total

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Review 2.  Cerebral blood flow and metabolic abnormalities in Alzheimer's disease.

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3.  Structural and functional biomarkers of prodromal Alzheimer's disease: a high-dimensional pattern classification study.

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Journal:  Neuroimage       Date:  2008-03-06       Impact factor: 6.556

Review 4.  Computational anatomical methods as applied to ageing and dementia.

Authors:  P M Thompson; L G Apostolova
Journal:  Br J Radiol       Date:  2007-12       Impact factor: 3.039

5.  The clinical diagnosis of Alzheimer's disease.

Authors:  J P Wade; T R Mirsen; V C Hachinski; M Fisman; C Lau; H Merskey
Journal:  Arch Neurol       Date:  1987-01

6.  FDG PET imaging in patients with pathologically verified dementia.

Authors:  J M Hoffman; K A Welsh-Bohmer; M Hanson; B Crain; C Hulette; N Earl; R E Coleman
Journal:  J Nucl Med       Date:  2000-11       Impact factor: 10.057

7.  Consistency of clinical diagnosis in a community-based longitudinal study of dementia and Alzheimer's disease.

Authors:  P W Schofield; M Tang; K Marder; K Bell; G Dooneief; R Lantigua; D Wilder; B Gurland; Y Stern; R Mayeux
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8.  A projection pursuit algorithm to classify individuals using fMRI data: Application to schizophrenia.

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Journal:  Neuroimage       Date:  2008-02-15       Impact factor: 6.556

9.  Automatic classification of MR scans in Alzheimer's disease.

Authors:  Stefan Klöppel; Cynthia M Stonnington; Carlton Chu; Bogdan Draganski; Rachael I Scahill; Jonathan D Rohrer; Nick C Fox; Clifford R Jack; John Ashburner; Richard S J Frackowiak
Journal:  Brain       Date:  2008-01-17       Impact factor: 13.501

10.  Imaging cerebral atrophy: normal ageing to Alzheimer's disease.

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  73 in total

Review 1.  The Alzheimer's disease neuroimaging initiative: progress report and future plans.

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Journal:  Alzheimers Dement       Date:  2010-05       Impact factor: 21.566

Review 2.  Alliance for aging research AD biomarkers work group: structural MRI.

Authors:  Clifford R Jack
Journal:  Neurobiol Aging       Date:  2011-12       Impact factor: 4.673

Review 3.  The Alzheimer's Disease Neuroimaging Initiative: a review of papers published since its inception.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; Enchi Liu; John C Morris; Ronald C Petersen; Andrew J Saykin; Mark E Schmidt; Leslie Shaw; Judith A Siuciak; Holly Soares; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2011-11-02       Impact factor: 21.566

4.  MKL for robust multi-modality AD classification.

Authors:  Chris Hinrichs; Vikas Singh; Guofan Xu; Sterling Johnson
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

5.  Semi-supervised pattern classification of medical images: application to mild cognitive impairment (MCI).

Authors:  Roman Filipovych; Christos Davatzikos
Journal:  Neuroimage       Date:  2010-12-31       Impact factor: 6.556

6.  Structural brain network constrained neuroimaging marker identification for predicting cognitive functions.

Authors:  Wang De; Feiping Nie; Heng Huang; Jingwen Yan; Shannon L Risacher; Andrew J Saykin; Li Shen
Journal:  Inf Process Med Imaging       Date:  2013

7.  Identifying AD-sensitive and cognition-relevant imaging biomarkers via joint classification and regression.

Authors:  Hua Wang; Feiping Nie; Heng Huang; Shannon Risacher; Andrew J Saykin; Li Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

8.  Discriminative multi-task feature selection for multi-modality classification of Alzheimer's disease.

Authors:  Tingting Ye; Chen Zu; Biao Jie; Dinggang Shen; Daoqiang Zhang
Journal:  Brain Imaging Behav       Date:  2016-09       Impact factor: 3.978

9.  Ensemble sparse classification of Alzheimer's disease.

Authors:  Manhua Liu; Daoqiang Zhang; Dinggang Shen
Journal:  Neuroimage       Date:  2012-01-14       Impact factor: 6.556

10.  Feed-forward hierarchical model of the ventral visual stream applied to functional brain image classification.

Authors:  David B Keator; James H Fallon; Anita Lakatos; Charless C Fowlkes; Steven G Potkin; Alexander Ihler
Journal:  Hum Brain Mapp       Date:  2012-07-30       Impact factor: 5.038

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