Literature DB >> 19481071

Nanoscopic description of biomembrane electrostatics: results of molecular dynamics simulations and fluorescence probing.

Alexander P Demchenko1, Semen O Yesylevskyy.   

Abstract

Electrostatic fields generated on and inside biological membranes are recognized to play a fundamental role in key processes of cell functioning. Their understanding requires an adequate description on the level of elementary charges and the reconstruction of electrostatic potentials by integration over all elementary interactions. Out of all the available research tools, only molecular dynamics simulations are capable of this, extending from the atomic to the mesoscopic level of description on the required time and space scale. A complementary approach is that offered by molecular probe methods, with the application of electrochromic dyes. Highly sensitive to intermolecular interactions, they generate integrated signals arising from electric fields produced by elementary charges at the sites of their location. This review is an attempt to provide a critical analysis of these two approaches and their present and potential applications. The results obtained by both methods are consistent in that they both show an extremely complex profile of the electric field in the membrane. The nanoscopic view, with two-dimensional averaging over the bilayer plane and formal separation of the electrostatic potential into surface (Psi(s)), dipole (Psi(d)) and transmembrane (Psi(t)) potentials, is constructive in the analysis of different functional properties of membranes.

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Year:  2009        PMID: 19481071     DOI: 10.1016/j.chemphyslip.2009.05.002

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.329


  18 in total

Review 1.  The concept of λ-ratiometry in fluorescence sensing and imaging.

Authors:  Alexander P Demchenko
Journal:  J Fluoresc       Date:  2010-04-01       Impact factor: 2.217

Review 2.  The plasma membrane as a capacitor for energy and metabolism.

Authors:  Supriyo Ray; Adam Kassan; Anna R Busija; Padmini Rangamani; Hemal H Patel
Journal:  Am J Physiol Cell Physiol       Date:  2015-11-25       Impact factor: 4.249

3.  Membrane permeation of a peptide: it is better to be positive.

Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

4.  Beyond annexin V: fluorescence response of cellular membranes to apoptosis.

Authors:  Alexander P Demchenko
Journal:  Cytotechnology       Date:  2012-07-14       Impact factor: 2.058

5.  Determination of the shape and curvature of nonplanar lipid bilayers that are bent in a single plane in molecular dynamics simulations.

Authors:  S O Yesylevskyy; S Kraszewski; C Ramseyer
Journal:  J Mol Model       Date:  2014-03-28       Impact factor: 1.810

6.  How cholesterol is distributed between monolayers in asymmetric lipid membranes.

Authors:  Semen O Yesylevskyy; Alexander P Demchenko
Journal:  Eur Biophys J       Date:  2012-10-09       Impact factor: 1.733

Review 7.  Fluorescence techniques for determination of the membrane potentials in high throughput screening.

Authors:  Magda Przybylo; Tomasz Borowik; Marek Langner
Journal:  J Fluoresc       Date:  2010-11       Impact factor: 2.217

8.  Structural changes in the mitochondrial Tim23 channel are coupled to the proton-motive force.

Authors:  Ketan Malhotra; Murugappan Sathappa; Judith S Landin; Arthur E Johnson; Nathan N Alder
Journal:  Nat Struct Mol Biol       Date:  2013-07-07       Impact factor: 15.369

9.  Differential effect of cholesterol and its biosynthetic precursors on membrane dipole potential.

Authors:  Sourav Haldar; Ravi Kumar Kanaparthi; Anunay Samanta; Amitabha Chattopadhyay
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

10.  Lattice simulations of phase morphology on lipid bilayers: renormalization, membrane shape, and electrostatic dipole interactions.

Authors:  Jonathan J Amazon; Gerald W Feigenson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-02-03
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