Literature DB >> 19478799

Predicting microRNA targets and functions: traps for the unwary.

William Ritchie, Stephane Flamant, John E J Rasko.   

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Year:  2009        PMID： 19478799     DOI： 10.1038/nmeth0609-397

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  10 in total

Review 1.  The functions of animal microRNAs.

Authors:  Victor Ambros
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

2.  Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.

Authors:  Benjamin P Lewis; Christopher B Burge; David P Bartel
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

3.  Combinatorial microRNA target predictions.

Authors:  Azra Krek; Dominic Grün; Matthew N Poy; Rachel Wolf; Lauren Rosenberg; Eric J Epstein; Philip MacMenamin; Isabelle da Piedade; Kristin C Gunsalus; Markus Stoffel; Nikolaus Rajewsky
Journal:  Nat Genet       Date:  2005-04-03       Impact factor: 38.330

4.  A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes.

Authors:  Kevin C Miranda; Tien Huynh; Yvonne Tay; Yen-Sin Ang; Wai-Leong Tam; Andrew M Thomson; Bing Lim; Isidore Rigoutsos
Journal:  Cell       Date:  2006-09-22       Impact factor: 41.582

Review 5.  The genome browser at UCSC for locating genes, and much more!

Authors:  Minou Bina
Journal:  Mol Biotechnol       Date:  2007-12-04       Impact factor: 2.695

6.  The role of site accessibility in microRNA target recognition.

Authors:  Michael Kertesz; Nicola Iovino; Ulrich Unnerstall; Ulrike Gaul; Eran Segal
Journal:  Nat Genet       Date:  2007-09-23       Impact factor: 38.330

7.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

8.  Human MicroRNA targets.

Authors:  Bino John; Anton J Enright; Alexei Aravin; Thomas Tuschl; Chris Sander; Debora S Marks
Journal:  PLoS Biol       Date:  2004-10-05       Impact factor: 8.029

9.  miRBase: tools for microRNA genomics.

Authors:  Sam Griffiths-Jones; Harpreet Kaur Saini; Stijn van Dongen; Anton J Enright
Journal:  Nucleic Acids Res       Date:  2007-11-08       Impact factor: 16.971

10.  Ensembl 2008.

Authors:  P Flicek; B L Aken; K Beal; B Ballester; M Caccamo; Y Chen; L Clarke; G Coates; F Cunningham; T Cutts; T Down; S C Dyer; T Eyre; S Fitzgerald; J Fernandez-Banet; S Gräf; S Haider; M Hammond; R Holland; K L Howe; K Howe; N Johnson; A Jenkinson; A Kähäri; D Keefe; F Kokocinski; E Kulesha; D Lawson; I Longden; K Megy; P Meidl; B Overduin; A Parker; B Pritchard; A Prlic; S Rice; D Rios; M Schuster; I Sealy; G Slater; D Smedley; G Spudich; S Trevanion; A J Vilella; J Vogel; S White; M Wood; E Birney; T Cox; V Curwen; R Durbin; X M Fernandez-Suarez; J Herrero; T J P Hubbard; A Kasprzyk; G Proctor; J Smith; A Ureta-Vidal; S Searle
Journal:  Nucleic Acids Res       Date:  2007-11-13       Impact factor: 16.971
  10 in total
  77 in total

1.  Multiple E2F-induced microRNAs prevent replicative stress in response to mitogenic signaling.

Authors:  María J Bueno; Marta Gómez de Cedrón; Usua Laresgoiti; José Fernández-Piqueras; Ana M Zubiaga; Marcos Malumbres
Journal:  Mol Cell Biol       Date:  2010-04-19       Impact factor: 4.272

Review 2.  Desperately seeking microRNA targets.

Authors:  Marshall Thomas; Judy Lieberman; Ashish Lal
Journal:  Nat Struct Mol Biol       Date:  2010-10       Impact factor: 15.369

3.  Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs.

Authors:  Yvonne Tay; Lev Kats; Leonardo Salmena; Dror Weiss; Shen Mynn Tan; Ugo Ala; Florian Karreth; Laura Poliseno; Paolo Provero; Ferdinando Di Cunto; Judy Lieberman; Isidore Rigoutsos; Pier Paolo Pandolfi
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

4.  Malignant germ cell tumors display common microRNA profiles resulting in global changes in expression of messenger RNA targets.

Authors:  Roger D Palmer; Matthew J Murray; Harpreet K Saini; Stijn van Dongen; Cei Abreu-Goodger; Balaji Muralidhar; Mark R Pett; Claire M Thornton; James C Nicholson; Anton J Enright; Nicholas Coleman
Journal:  Cancer Res       Date:  2010-03-23       Impact factor: 12.701

Review 5.  Non-coding RNAs turn up the heat: an emerging layer of novel regulators in the mammalian heat shock response.

Authors:  Robert F Place; Emily J Noonan
Journal:  Cell Stress Chaperones       Date:  2013-09-04       Impact factor: 3.667

6.  MicroRNA-135b regulates ERα, AR and HIF1AN and affects breast and prostate cancer cell growth.

Authors:  Anna Aakula; Suvi-Katri Leivonen; Petteri Hintsanen; Tero Aittokallio; Yvonne Ceder; Anne-Lise Børresen-Dale; Merja Perälä; Päivi Östling; Olli Kallioniemi
Journal:  Mol Oncol       Date:  2015-03-21       Impact factor: 6.603

Review 7.  A combined immunoprecipitation, mass spectrometric and nucleic acid sequencing approach to determine microRNA-mediated post-transcriptional gene regulatory networks.

Authors:  Jeffrey N Savas; Naoko Tanese
Journal:  Brief Funct Genomics       Date:  2010-01-06       Impact factor: 4.241

8.  Systematic analysis of dynamic miRNA-target interactions during C. elegans development.

Authors:  Liang Zhang; Molly Hammell; Brian A Kudlow; Victor Ambros; Min Han
Journal:  Development       Date:  2009-08-12       Impact factor: 6.868

Review 9.  MicroRNAs in skeletal myogenesis.

Authors:  Yejing Ge; Jie Chen
Journal:  Cell Cycle       Date:  2011-02-01       Impact factor: 4.534

10.  Human platelet microRNA-mRNA networks associated with age and gender revealed by integrated plateletomics.

Authors:  Lukas M Simon; Leonard C Edelstein; Srikanth Nagalla; Angela B Woodley; Edward S Chen; Xianguo Kong; Lin Ma; Paolo Fortina; Satya Kunapuli; Michael Holinstat; Steven E McKenzie; Jing-Fei Dong; Chad A Shaw; Paul F Bray
Journal:  Blood       Date:  2014-02-12       Impact factor: 22.113
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