Literature DB >> 19478444

Crystallization and X-ray diffraction data collection of topoisomerase IV ParE subunit from Xanthomonas oryzae pv. oryzae.

Hye Jeong Shin1, Mirim Yun, Ju Yeon Song, Hyun Jeong Kim, Yong Seok Heo.   

Abstract

Topoisomerase IV is involved in topological changes in the bacterial genome using the free energy from ATP hydrolysis. Its functions are the decatenation of daughter chromosomes following replication by DNA relaxation and double-strand DNA breakage. In this study, the N-terminal fragment of the topoisomerase IV ParE subunit from Xanthomonas oryzae pv. oryzae was overexpressed in Escherichia coli, purified and crystallized. Diffraction data were collected to 2.15 A resolution using a synchrotron-radiation source. The crystal belonged to space group P4(2)2(1)2, with unit-cell parameters a = b = 105.30, c = 133.76 A. The asymmetric unit contains one molecule, with a corresponding V(M) of 4.21 A(3) Da(-1) and a solvent content of 69.6%.

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Year:  2009        PMID: 19478444      PMCID: PMC2688423          DOI: 10.1107/S1744309109016649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Alteration of Escherichia coli topoisomerase IV to novobiocin resistance.

Authors:  Christine D Hardy; Nicholas R Cozzarelli
Journal:  Antimicrob Agents Chemother       Date:  2003-03       Impact factor: 5.191

2.  Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coli.

Authors:  E L Zechiedrich; N R Cozzarelli
Journal:  Genes Dev       Date:  1995-11-15       Impact factor: 11.361

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center.

Authors:  L Brino; A Urzhumtsev; M Mousli; C Bronner; A Mitschler; P Oudet; D Moras
Journal:  J Biol Chem       Date:  2000-03-31       Impact factor: 5.157

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 6.  Molecular determinants of disease and resistance in interactions of Xanthomonas oryzae pv. oryzae and rice.

Authors:  Yuwei Shen; Pamela Ronald
Journal:  Microbes Infect       Date:  2002-11       Impact factor: 2.700

7.  Topoisomerase IV catalysis and the mechanism of quinolone action.

Authors:  V E Anderson; T D Gootz; N Osheroff
Journal:  J Biol Chem       Date:  1998-07-10       Impact factor: 5.157

8.  Molecular analysis of the hrp gene cluster in Xanthomonas oryzae pathovar oryzae KACC10859.

Authors:  Hee-Jung Cho; Young-Jin Park; Tae-Hwan Noh; Yeong-Tae Kim; Jeong-Gu Kim; Eun-Sung Song; Dong-Hee Lee; Byoung-Moo Lee
Journal:  Microb Pathog       Date:  2007-12-23       Impact factor: 3.738

Review 9.  The ATP-binding site of type II topoisomerases as a target for antibacterial drugs.

Authors:  Anthony Maxwell; David M Lawson
Journal:  Curr Top Med Chem       Date:  2003       Impact factor: 3.295

10.  The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Authors:  Byoung-Moo Lee; Young-Jin Park; Dong-Suk Park; Hee-Wan Kang; Jeong-Gu Kim; Eun-Sung Song; In-Cheol Park; Ung-Han Yoon; Jang-Ho Hahn; Bon-Sung Koo; Gil-Bok Lee; Hyungtae Kim; Hyun-Seok Park; Kyong-Oh Yoon; Jeong-Hyun Kim; Chol-hee Jung; Nae-Hyung Koh; Jeong-Sun Seo; Seung-Joo Go
Journal:  Nucleic Acids Res       Date:  2005-01-26       Impact factor: 16.971

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