Literature DB >> 19477196

New yeast recombineering tools for bacteria.

Robert M Q Shanks1, Daniel E Kadouri, Daniel P MacEachran, George A O'Toole.   

Abstract

Recombineering with Saccharomyces cerevisiae is a powerful methodology that can be used to clone multiple unmarked pieces of DNA to generate complex constructs with high efficiency. Here, we introduce two new tools that utilize the native recombination enzymes of S. cerevisiae to facilitate the manipulation of DNA. First, yeast recombineering was used to make directed nested deletions in a bacteria-yeast shuttle plasmid using only one or two single stranded oligomers, thus obviating the need for a PCR step. Second, we have generated several new shuttle vectors for yeast recombineering capable of replication in a wide variety of bacterial genera. As a demonstration of utility, some of the approaches and vectors generated in this study were used to make a pigP deletion mutation in the opportunistic pathogen Serratia marcescens.

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Year:  2009        PMID: 19477196      PMCID: PMC2737453          DOI: 10.1016/j.plasmid.2009.05.002

Source DB:  PubMed          Journal:  Plasmid        ISSN: 0147-619X            Impact factor:   3.466


  56 in total

1.  Synergy between tetA and rpsL provides high-stringency positive and negative selection in bacterial artificial chromosome vectors.

Authors:  T A Stavropoulos; C A Strathdee
Journal:  Genomics       Date:  2001-02-15       Impact factor: 5.736

Review 2.  Vectors to express foreign genes and techniques to monitor gene expression in Pseudomonads.

Authors:  H P Schweizer
Journal:  Curr Opin Biotechnol       Date:  2001-10       Impact factor: 9.740

3.  Construction of a mariner-based transposon for epitope-tagging and genomic targeting.

Authors:  Su L Chiang; Eric J Rubin
Journal:  Gene       Date:  2002-08-21       Impact factor: 3.688

4.  NKBOR, a mini-Tn10-based transposon for random insertion in the chromosome of Gram-negative bacteria and the rapid recovery of sequences flanking the insertion sites in Escherichia coli.

Authors:  M Rossignol; A Basset; O Espéli; F Boccard
Journal:  Res Microbiol       Date:  2001-06       Impact factor: 3.992

5.  Markerless gene replacement in Escherichia coli stimulated by a double-strand break in the chromosome.

Authors:  G Pósfai; V Kolisnychenko; Z Bereczki; F R Blattner
Journal:  Nucleic Acids Res       Date:  1999-11-15       Impact factor: 16.971

6.  Oligonucleotide-mediated, PCR-independent cloning by homologous recombination.

Authors:  D J DeMarini; C L Creasy; Q Lu; J Mao; S A Sheardown; G M Sathe; G P Livi
Journal:  Biotechniques       Date:  2001-03       Impact factor: 1.993

7.  Linker-mediated recombinational subcloning of large DNA fragments using yeast.

Authors:  Christopher K Raymond; Elizabeth H Sims; Maynard V Olson
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

8.  Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa.

Authors:  Christopher K Raymond; Elizabeth H Sims; Arnold Kas; David H Spencer; Tanya V Kutyavin; Richard G Ivey; Yang Zhou; Rajinder Kaul; James B Clendenning; Maynard V Olson
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

9.  Circular R-factor molecules controlling penicillinase synthesis, replicating in Escherichia coli under either relaxed or stringent control.

Authors:  P Kontomichalou; M Mitani; R C Clowes
Journal:  J Bacteriol       Date:  1970-10       Impact factor: 3.490

10.  Global transcriptional response to mammalian temperature provides new insight into Francisella tularensis pathogenesis.

Authors:  Joseph Horzempa; Paul E Carlson; Dawn M O'Dee; Robert M Q Shanks; Gerard J Nau
Journal:  BMC Microbiol       Date:  2008-10-08       Impact factor: 3.605

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  60 in total

1.  EepR Mediates Secreted-Protein Production, Desiccation Survival, and Proliferation in a Corneal Infection Model.

Authors:  Kimberly M Brothers; Nicholas A Stella; Eric G Romanowski; Regis P Kowalski; Robert M Q Shanks
Journal:  Infect Immun       Date:  2015-08-31       Impact factor: 3.441

2.  New vector tools with a hygromycin resistance marker for use with opportunistic pathogens.

Authors:  Eric J Kalivoda; Joseph Horzempa; Nicholas A Stella; Aroba Sadaf; Regis P Kowalski; Gerard J Nau; Robert M Q Shanks
Journal:  Mol Biotechnol       Date:  2011-05       Impact factor: 2.695

3.  Identification of SlpB, a Cytotoxic Protease from Serratia marcescens.

Authors:  Robert M Q Shanks; Nicholas A Stella; Kristin M Hunt; Kimberly M Brothers; Liang Zhang; Patrick H Thibodeau
Journal:  Infect Immun       Date:  2015-05-04       Impact factor: 3.441

4.  Utilization of an unstable plasmid and the I-SceI endonuclease to generate routine markerless deletion mutants in Francisella tularensis.

Authors:  Joseph Horzempa; Robert M Q Shanks; Matthew J Brown; Brian C Russo; Dawn M O'Dee; Gerard J Nau
Journal:  J Microbiol Methods       Date:  2009-10-29       Impact factor: 2.363

5.  An IgaA/UmoB Family Protein from Serratia marcescens Regulates Motility, Capsular Polysaccharide Biosynthesis, and Secondary Metabolite Production.

Authors:  Nicholas A Stella; Kimberly M Brothers; Jake D Callaghan; Angelina M Passerini; Cihad Sigindere; Preston J Hill; Xinyu Liu; Daniel J Wozniak; Robert M Q Shanks
Journal:  Appl Environ Microbiol       Date:  2018-03-01       Impact factor: 4.792

6.  Suppressor analysis of eepR mutant defects reveals coordinate regulation of secondary metabolites and serralysin biosynthesis by EepR and HexS.

Authors:  Robert M Q Shanks; Nicholas A Stella; Roni M Lahr; Marissa A Aston; Kimberly M Brothers; Jake D Callaghan; Cihad Sigindere; Xinyu Liu
Journal:  Microbiology       Date:  2017-02       Impact factor: 2.777

7.  The LysR Transcription Factor, HexS, Is Required for Glucose Inhibition of Prodigiosin Production by Serratia marcescens.

Authors:  Nicholas A Stella; James E Fender; Roni M Lahr; Eric J Kalivoda; Robert M Q Shanks
Journal:  Adv Microbiol       Date:  2012-12-01

8.  LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.

Authors:  Charlotte M Wilson; Dawn M Klingeman; Caleb Schlachter; Mustafa H Syed; Chia-Wei Wu; Adam M Guss; Steven D Brown
Journal:  Appl Environ Microbiol       Date:  2017-02-15       Impact factor: 4.792

9.  Genomic plasticity enables a secondary electron transport pathway in Shewanella oneidensis.

Authors:  M Schicklberger; G Sturm; J Gescher
Journal:  Appl Environ Microbiol       Date:  2012-12-07       Impact factor: 4.792

10.  Mutation of crp mediates Serratia marcescens serralysin and global secreted protein production.

Authors:  Robert M Q Shanks; Nicholas A Stella; Kristin E Arena; James E Fender
Journal:  Res Microbiol       Date:  2012-10-13       Impact factor: 3.992

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