Literature DB >> 19475726

The NCI Thesaurus quality assurance life cycle.

Sherri de Coronado1, Lawrence W Wright, Gilberto Fragoso, Margaret W Haber, Elizabeth A Hahn-Dantona, Francis W Hartel, Sharon L Quan, Tracy Safran, Nicole Thomas, Lori Whiteman.   

Abstract

The National Cancer Institute Enterprise Vocabulary Services (NCI EVS) uses a wide range of quality assurance (QA) techniques to maintain and extend NCI Thesaurus (NCIt). NCIt is a reference terminology and biomedical ontology used in a growing number of NCI and other systems that extend from translational and basic research through clinical care to public information and administrative activities. Both automated and manual QA techniques are employed throughout the editing and publication cycle, which includes inserting and editing NCIt in NCI Metathesaurus. NCI EVS conducts its own additional periodic and ongoing content QA. External reviews, and extensive evaluation by and interaction with EVS partners and other users, have also played an important part in the QA process. There have always been tensions and compromises between meeting the needs of dependent systems and providing consistent and well-structured content; external QA and feedback have been important in identifying and addressing such issues. Currently, NCI EVS is exploring new approaches to broaden external participation in the terminology development and QA process.

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Year:  2009        PMID: 19475726     DOI: 10.1016/j.jbi.2009.01.003

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  32 in total

1.  Cross-terminology mapping challenges: a demonstration using medication terminological systems.

Authors:  Himali Saitwal; David Qing; Stephen Jones; Elmer V Bernstam; Christopher G Chute; Todd R Johnson
Journal:  J Biomed Inform       Date:  2012-06-28       Impact factor: 6.317

2.  The Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus.

Authors:  Stefan Schulz; Daniel Schober; Ilinca Tudose; Holger Stenzhorn
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

3.  Topological-Pattern-Based Recommendation of UMLS Concepts for National Cancer Institute Thesaurus.

Authors:  Zhe He; Yan Chen; Sherri de Coronado; Katrina Piskorski; James Geller
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

4.  Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns.

Authors:  Rashmie Abeysinghe; Michael A Brooks; Jeffery Talbert; Cui Licong
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

5.  Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.

Authors:  Ling Zheng; Yan Chen; Gai Elhanan; Yehoshua Perl; James Geller; Christopher Ochs
Journal:  J Biomed Inform       Date:  2018-05-28       Impact factor: 6.317

6.  Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.

Authors:  Christopher Ochs; Zhe He; Ling Zheng; James Geller; Yehoshua Perl; George Hripcsak; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-03-14       Impact factor: 6.317

7.  Extended Analysis of Topological-Pattern-Based Ontology Enrichment.

Authors:  Zhe He; Vipina Kuttichi Keloth; Yan Chen; James Geller
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2019-01-24

8.  The development of non-coding RNA ontology.

Authors:  Jingshan Huang; Karen Eilbeck; Barry Smith; Judith A Blake; Dejing Dou; Weili Huang; Darren A Natale; Alan Ruttenberg; Jun Huan; Michael T Zimmermann; Guoqian Jiang; Yu Lin; Bin Wu; Harrison J Strachan; Nisansa de Silva; Mohan Vamsi Kasukurthi; Vikash Kumar Jha; Yongqun He; Shaojie Zhang; Xiaowei Wang; Zixing Liu; Glen M Borchert; Ming Tan
Journal:  Int J Data Min Bioinform       Date:  2016       Impact factor: 0.667

9.  Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach.

Authors:  Guoqian Jiang; Harold R Solbrig; Eric Prud'hommeaux; Cui Tao; Chunhua Weng; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

10.  Case Study: Semantic Annotation of a Pediatric Critical Care Research Study.

Authors:  Katherine A Sward; Sarah Rubin; Tammara L Jenkins; Christopher J Newth; J Michael Dean
Journal:  Comput Inform Nurs       Date:  2016-03       Impact factor: 1.985

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