Literature DB >> 19472509

A decade of improvements in quantification of gene expression and internal standard selection.

Olivier Thellin1, Benaissa ElMoualij, Ernst Heinen, Willy Zorzi.   

Abstract

Major improvements have been made in mRNA quantification and internal standard selection over the last decade. Our aim in this paper is to present the main developments that are of interest for practical laboratory work, contrasting the situation as it is now with the one of ten years ago, and presenting some excellent examples of what can be done today. Specifically, we will mainly discuss Real-Time RT-PCR major improvements that have been performed in the following areas: the most commonly used quantification techniques, the mathematical and software tools created to help researchers in their work on internal standard selection, the availability of detection chemistries and technical information and of commercial tools and services. In addition to mRNA quantification, we will also discuss some aspects of non-coding RNA and protein quantification. In addition to technical improvements, the development of international cooperation and the creation of technical databases are likely to represent a major tool for the future in the standardization of gene expression quantification.

Mesh:

Substances:

Year:  2009        PMID: 19472509     DOI: 10.1016/j.biotechadv.2009.01.010

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  32 in total

1.  Quantitative analysis of BDNF/TrkB protein and mRNA in cortical and striatal neurons using α-tubulin as a normalization factor.

Authors:  Bin Ma; Jeffrey N Savas; Moses V Chao; Naoko Tanese
Journal:  Cytometry A       Date:  2012-05-30       Impact factor: 4.355

2.  Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR.

Authors:  Francesca Turroni; Elena Foroni; Barbara Montanini; Alice Viappiani; Francesco Strati; Sabrina Duranti; Alberto Ferrarini; Massimo Delledonne; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

Review 3.  Reference genes in real-time PCR.

Authors:  Bartłomiej Kozera; Marcin Rapacz
Journal:  J Appl Genet       Date:  2013-11       Impact factor: 3.240

4.  An efficient RNA isolation procedure and identification of reference genes for normalization of gene expression in blueberry.

Authors:  Tripti Vashisth; Lisa Klima Johnson; Anish Malladi
Journal:  Plant Cell Rep       Date:  2011-07-15       Impact factor: 4.570

5.  Quantification of yeast and bacterial gene transcripts in retail cheeses by reverse transcription-quantitative PCR.

Authors:  Christophe Monnet; Cécile Straub; Jessie Castellote; Djamila Onesime; Pascal Bonnarme; Françoise Irlinger
Journal:  Appl Environ Microbiol       Date:  2012-11-02       Impact factor: 4.792

6.  Label-free mass spectrometry exploits dozens of detected peptides to quantify lamins in wildtype and knockdown cells.

Authors:  Joe Swift; Takamasa Harada; Amnon Buxboim; Jae-Won Shin; Hsin-Yao Tang; David W Speicher; Dennis E Discher
Journal:  Nucleus       Date:  2013-12-06       Impact factor: 4.197

7.  Characterization of reference genes for quantitative real-time PCR analysis in various tissues of Anoectochilus roxburghii.

Authors:  Gang Zhang; Mingming Zhao; Chao Song; Anxiong Luo; Jianfa Bai; Shunxing Guo
Journal:  Mol Biol Rep       Date:  2011-12-27       Impact factor: 2.316

8.  Normalizing gene expression by quantitative PCR during somatic embryogenesis in two representative conifer species: Pinus pinaster and Picea abies.

Authors:  José J de Vega-Bartol; Raquen Raissa Santos; Marta Simões; Célia M Miguel
Journal:  Plant Cell Rep       Date:  2013-03-26       Impact factor: 4.570

9.  Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data.

Authors:  Sinara Artico; Sarah M Nardeli; Osmundo Brilhante; Maria Fátima Grossi-de-Sa; Marcio Alves-Ferreira
Journal:  BMC Plant Biol       Date:  2010-03-21       Impact factor: 4.215

10.  Underlying mechanisms and ecological context of variation in exploratory behavior of the Argentine ant, Linepithema humile.

Authors:  Hannah Page; Andrew Sweeney; Anna Pilko; Noa Pinter-Wollman
Journal:  J Exp Biol       Date:  2018-12-12       Impact factor: 3.312

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.