Literature DB >> 19471646

Slim-prim: a biomedical informatics database to promote translational research.

Teeradache Viangteeravat1, Ian M Brooks, Ebony J Smith, Nicolas Furlotte, Somchan Vuthipadadon, Rebecca Reynolds, Chanchai Singhanayok McDonald.   

Abstract

With the current national emphasis on translational research, data-exchange systems that can bridge the basic and clinical sciences are vital. To meet this challenge, we have developed Slim-Prim, an integrated data system (IDS) for collecting, processing, archiving, and distributing basic and clinical research data. Slim-Prim is accessed via user-friendly Web-based applications, thus increasing data accessibility and eliminating the security risks inherent with office or laboratory servers. Slim-Prim serves as a laboratory management interface and archival data repository for institutional projects. Importantly, multiple levels of controlled access allow HIPAA-compliant sharing of de-identified information to facilitate data sharing and analysis across research domains; thus Slim-Prim encourages collaboration between researchers and clinicians, an essential factor in the development of translational research. Slim-Prim is an example of utilizing an IDS to improve organizational efficiency and to bridge the gap between laboratory discovery and practice.

Entities:  

Keywords:  Bioinformatics; basic research; clinical trial; data sharing; health management; laboratory management

Mesh:

Year:  2009        PMID: 19471646      PMCID: PMC2682606     

Source DB:  PubMed          Journal:  Perspect Health Inf Manag        ISSN: 1559-4122


  7 in total

1.  Metadata-driven ad hoc query of patient data: meeting the needs of clinical studies.

Authors:  Aniruddha M Deshpande; Cynthia Brandt; Prakash M Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2002 Jul-Aug       Impact factor: 4.497

2.  Integrating query of relational and textual data in clinical databases: a case study.

Authors:  John M Fisk; Pradeep Mutalik; Forrest W Levin; Joseph Erdos; Caroline Taylor; Prakash Nadkarni
Journal:  J Am Med Inform Assoc       Date:  2003 Jan-Feb       Impact factor: 4.497

3.  BioMediator data integration: beyond genomics to neuroscience data.

Authors:  K Wang; P Tarczy-Hornoch; R Shaker; P Mork; J F Brinkley
Journal:  AMIA Annu Symp Proc       Date:  2005

4.  Anatomy of data integration.

Authors:  Olga Brazhnik; John F Jones
Journal:  J Biomed Inform       Date:  2006-09-24       Impact factor: 6.317

5.  Dynamic tables: an architecture for managing evolving, heterogeneous biomedical data in relational database management systems.

Authors:  John Corwin; Avi Silberschatz; Perry L Miller; Luis Marenco
Journal:  J Am Med Inform Assoc       Date:  2006-10-26       Impact factor: 4.497

6.  Guidelines for the effective use of entity-attribute-value modeling for biomedical databases.

Authors:  Valentin Dinu; Prakash Nadkarni
Journal:  Int J Med Inform       Date:  2006-11-13       Impact factor: 4.046

Review 7.  Generic design of Web-based clinical databases.

Authors:  Jacob Anhøj
Journal:  J Med Internet Res       Date:  2003-11-04       Impact factor: 5.428

  7 in total
  3 in total

1.  The DEDUCE Guided Query tool: providing simplified access to clinical data for research and quality improvement.

Authors:  Monica M Horvath; Stephanie Winfield; Steve Evans; Steve Slopek; Howard Shang; Jeffrey Ferranti
Journal:  J Biomed Inform       Date:  2010-12-02       Impact factor: 6.317

2.  Effect of gabapentin on sexual function in vulvodynia: a randomized, placebo-controlled trial.

Authors:  Gloria A Bachmann; Candace S Brown; Nancy A Phillips; Leslie A Rawlinson; Xinhua Yu; Ronald Wood; David C Foster
Journal:  Am J Obstet Gynecol       Date:  2018-10-24       Impact factor: 8.661

3.  Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping.

Authors:  Teeradache Viangteeravat; Matthew N Anyanwu; Venkateswara Ra Nagisetty; Emin Kuscu; Mark Eijiro Sakauye; Duojiao Wu
Journal:  J Clin Bioinforma       Date:  2011-11-21
  3 in total

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