Literature DB >> 19466866

Thermodynamically dominant hydration structures of aqueous ions.

Safir Merchant1, D Asthagiri.   

Abstract

The hydration free energy of an ion is separated into a chemical term, arising due to the interaction of the ion with water molecules within the defined coordination sphere (the inner shell), a packing contribution, accounting for forming an ion-free coordination sphere (the observation volume) in the solvent, and a long range correction, accounting for the interaction of the ion with the solvent outside the coordination sphere. The chemical term is recast as a sum over coordination states, with the nth term depending on the probability of observing n water molecules in the observation volume and the free energy of assembling the n water molecules around the ion in the presence of the outer-shell solvent. Each stepwise increment in the coordination number more fully accounts for the chemical contribution, and this molecular aufbau approach is used to interrogate the thermodynamic importance of various hydration structures X[H(2)O](n) of X(aq) (X = Na(+), K(+), F(-)) within a classical molecular mechanics framework. States with n less than (and at best equal to) the most probable coordination state ñ account for all of the chemical term and evince the role of the ion in drawing water molecules into the coordination sphere. For states with n > ñ, the influence of the ion is tempered and changes in coordination states due to density fluctuations in water also appear important. Thus the influence of the ion on the solvent matrix is local, and only a subset of water molecules (n < or = ñ) contributes dominantly to the hydration thermodynamics. The n = 4 state of Na(+) (ñ = 5) and K(+) (ñ = 7) and the n = 6 state of F(-) (ñ = 6) are thermodynamically dominant; adding a water molecule to the dominant state additionally contributes only about 2-3 k(B)T toward the chemical term, but removing a water molecule is very unfavorable.

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Year:  2009        PMID: 19466866     DOI: 10.1063/1.3132709

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Intramolecular Interactions Overcome Hydration to Drive the Collapse Transition of Gly15.

Authors:  D Asthagiri; Deepti Karandur; Dheeraj S Tomar; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2017-08-21       Impact factor: 2.991

2.  Assessing the accuracy of approximate treatments of ion hydration based on primitive quasichemical theory.

Authors:  Benoît Roux; Haibo Yu
Journal:  J Chem Phys       Date:  2010-06-21       Impact factor: 3.488

3.  Solvation free energy of the peptide group: its model dependence and implications for the additive-transfer free-energy model of protein stability.

Authors:  Dheeraj S Tomar; D Asthagiri; Valéry Weber
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

4.  Importance of Hydrophilic Hydration and Intramolecular Interactions in the Thermodynamics of Helix-Coil Transition and Helix-Helix Assembly in a Deca-Alanine Peptide.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2015-12-22       Impact factor: 2.991

5.  Ion selectivity from local configurations of ligands in solutions and ion channels.

Authors:  D Asthagiri; P D Dixit; S Merchant; M E Paulaitis; L R Pratt; S B Rempe; S Varma
Journal:  Chem Phys Lett       Date:  2010-01-18       Impact factor: 2.328

Review 6.  Thermodynamics of ion selectivity in the KcsA K+ channel.

Authors:  Purushottam D Dixit; Dilip Asthagiri
Journal:  J Gen Physiol       Date:  2011-05       Impact factor: 4.086

Review 7.  Membrane Exporters of Fluoride Ion.

Authors:  Benjamin C McIlwain; Michal T Ruprecht; Randy B Stockbridge
Journal:  Annu Rev Biochem       Date:  2021-01-25       Impact factor: 27.258

8.  Conditional solvation thermodynamics of isoleucine in model peptides and the limitations of the group-transfer model.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2014-04-03       Impact factor: 2.991

9.  Inferring Microscopic Kinetic Rates from Stationary State Distributions.

Authors:  Purushottam D Dixit; Ken A Dill
Journal:  J Chem Theory Comput       Date:  2014-06-02       Impact factor: 6.006

  9 in total

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