Literature DB >> 19465863

Effects of magnetic resonance image interpolation on the results of texture-based pattern classification: a phantom study.

Marius E Mayerhoefer1, Pavol Szomolanyi, Daniel Jirak, Andreas Berg, Andrzej Materka, Albert Dirisamer, Siegfried Trattnig.   

Abstract

OBJECTIVES: To (1) determine whether magnetic resonance (MR) image interpolation at the pixel or k-space level can improve the results of texture-based pattern classification, and (2) compare the effects of image interpolation on texture features of different categories, with regard to their ability to distinguish between different patterns.
MATERIALS AND METHODS: We obtained T2-weighted, multislice multiecho MR images of 2 sets of each 3 polystyrene spheres and agar gel (PSAG) phantoms with different nodular patterns (sphere diameter: PSAG-1, 0.8-1.25 mm; PSAG-2, 1.25-2.0 mm; PSAG-3, 2.0-3.15 mm), using a 3.0 Tesla scanner equipped with a dedicated microimaging gradient insert. Image datasets, which consisted of 20 consecutive axial slices each, were obtained with a constant field of view (30 x 30 mm(2)), but with variations of matrix size (MTX): 16 x 16; 32 x 32; 64 x 64; 128 x 128; and 256 x 256. Original images were interpolated to higher matrix sizes (up to 256 x 256) by means of linear and cubic B-spline (pixel level) as well as zero-fill (k-space level) interpolation. For both original and interpolated image datasets, texture features derived from the co-occurrence (COC) and run-length matrix (RUN), absolute gradient (GRA), autoregressive model, and wavelet transform (WAV) were calculated independently. Based on the 3 best texture features of each category, as determined by calculation of Fisher coefficients using images from the first set of PSAG phantoms (training dataset), k-means clustering was performed to separate PSAG-1, PSAG-2, and PSAG-3 images belonging to the second set of phantoms (test dataset). This was done independently for all original and interpolated image datasets. Rates of misclassified data vectors were used as primary outcome measures.
RESULTS: For images based on a very low original resolution (MTX = 16 x 16), misclassification rates remained high, despite the use of interpolation. For higher resolution images (MTX = 32 x 32 and 64 x 64), interpolation enhanced the ability of texture features, in all categories except WAV, to discriminate between the 3 phantoms. This positive effect was particularly pronounced for COC and RUN features, and to a lesser degree, also GRA features. No consistent improvements, and even some negative effects, were observed for WAV features, after interpolation. Although there was no clear superiority of any single interpolation techniques at very low resolution (MTX = 16 x 16), zero-fill interpolation outperformed the two pixel interpolation techniques, for images based on higher original resolutions (MTX = 32 x 32 and 64 x 64). We observed the most considerable improvements after interpolation by a factor of 2 or 4.
CONCLUSIONS: MR image interpolation has the potential to improve the results of pattern classification, based on COC, RUN, and GRA features. Unless spatial resolution is very poor, zero-filling is the interpolation technique of choice, with a recommended maximum interpolation factor of 4.

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Year:  2009        PMID: 19465863     DOI: 10.1097/RLI.0b013e3181a50a66

Source DB:  PubMed          Journal:  Invest Radiol        ISSN: 0020-9996            Impact factor:   6.016


  19 in total

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Journal:  Med Phys       Date:  2021-09-29       Impact factor: 4.506

2.  Image interpolation improves the zonal analysis of cartilage T2 relaxation in MRI.

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3.  Pre-operative MRI Radiomics for the Prediction of Progression and Recurrence in Meningiomas.

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4.  Multi-institutional validation of a novel textural analysis tool for preoperative stratification of suspected thyroid tumors on diffusion-weighted MRI.

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Journal:  Magn Reson Med       Date:  2015-05-20       Impact factor: 4.668

5.  Texture analysis of acute myocardial infarction with CT: First experience study.

Authors:  Ricarda Hinzpeter; Matthias W Wagner; Moritz C Wurnig; Burkhardt Seifert; Robert Manka; Hatem Alkadhi
Journal:  PLoS One       Date:  2017-11-02       Impact factor: 3.240

6.  Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters.

Authors:  Patrik Brynolfsson; David Nilsson; Turid Torheim; Thomas Asklund; Camilla Thellenberg Karlsson; Johan Trygg; Tufve Nyholm; Anders Garpebring
Journal:  Sci Rep       Date:  2017-06-22       Impact factor: 4.379

7.  Radiomics of liver MRI predict metastases in mice.

Authors:  Anton S Becker; Marcel A Schneider; Moritz C Wurnig; Matthias Wagner; Pierre A Clavien; Andreas Boss
Journal:  Eur Radiol Exp       Date:  2018-05-28

Review 8.  Physical imaging phantoms for simulation of tumor heterogeneity in PET, CT, and MRI: An overview of existing designs.

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Journal:  Med Phys       Date:  2020-02-12       Impact factor: 4.071

Review 9.  Image-Based Cardiac Diagnosis With Machine Learning: A Review.

Authors:  Carlos Martin-Isla; Victor M Campello; Cristian Izquierdo; Zahra Raisi-Estabragh; Bettina Baeßler; Steffen E Petersen; Karim Lekadir
Journal:  Front Cardiovasc Med       Date:  2020-01-24

10.  Diagnostic performance of machine learning applied to texture analysis-derived features for breast lesion characterisation at automated breast ultrasound: a pilot study.

Authors:  Magda Marcon; Alexander Ciritsis; Cristina Rossi; Anton S Becker; Nicole Berger; Moritz C Wurnig; Matthias W Wagner; Thomas Frauenfelder; Andreas Boss
Journal:  Eur Radiol Exp       Date:  2019-11-01
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