Literature DB >> 19459702

Allosteric site variants of Haemophilus influenzae beta-carbonic anhydrase.

Roger S Rowlett1, Chingkuang Tu, Joseph Lee, Ariel G Herman, Douglas A Chapnick, Shalini H Shah, Peter C Gareiss.   

Abstract

Haemophilus influenzae beta-carbonic anhydrase (HICA) is hypothesized to be an allosteric protein that is regulated by the binding of bicarbonate ion to a non-catalytic (inhibitory) site that controls the ligation of Asp44 to the catalytically essential zinc ion. We report here the X-ray crystallographic structures of two variants (W39F and Y181F) involved in the binding of bicarbonate ion in the non-catalytic site and an active-site variant (D44N) that is incapable of forming a strong zinc ligand. The alteration of Trp39 to Phe increases the apparent K(i) for bicarbonate inhibition by 4.8-fold. While the structures of W39F and Y181F are very similar to the wild-type enzyme, the X-ray crystal structure of the D44N variant reveals that it has adopted an active-site conformation nearly identical to that of non-allosteric beta-carbonic anhydrases. We propose that the structure of the D44N variant is likely to be representative of the active conformation of the enzyme. These results lend additional support to the hypothesis that HICA is an allosteric enzyme that can adopt active and inactive conformations, the latter of which is stabilized by bicarbonate ion binding to a non-catalytic site.

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Year:  2009        PMID: 19459702      PMCID: PMC2740983          DOI: 10.1021/bi900663h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  44 in total

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2.  The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo.

Authors:  Sheridan R Macauley; Sabrina A Zimmerman; Ethel E Apolinario; Caryn Evilia; Ya-Ming Hou; James G Ferry; Kevin R Sowers
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

3.  Engineering the hydrophobic pocket of carbonic anhydrase II.

Authors:  R S Alexander; S K Nair; D W Christianson
Journal:  Biochemistry       Date:  1991-11-19       Impact factor: 3.162

4.  X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.

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Journal:  J Biol Chem       Date:  2000-02-25       Impact factor: 5.157

5.  The active site architecture of Pisum sativum beta-carbonic anhydrase is a mirror image of that of alpha-carbonic anhydrases.

Authors:  M S Kimber; E F Pai
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6.  Kinetic studies of pea carbonic anhydrase.

Authors:  I M Johansson; C Forsman
Journal:  Eur J Biochem       Date:  1993-12-01

7.  Carbonic anhydrase: oxygen-18 exchange catalyzed by an enzyme with rate-contributing proton-transfer steps.

Authors:  D N Silverman
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

8.  A carbonic anhydrase from the archaeon Methanosarcina thermophila.

Authors:  B E Alber; J G Ferry
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

9.  Kinetic and structural characterization of spinach carbonic anhydrase.

Authors:  R S Rowlett; M R Chance; M D Wirt; D E Sidelinger; J R Royal; M Woodroffe; Y F Wang; R P Saha; M G Lam
Journal:  Biochemistry       Date:  1994-11-29       Impact factor: 3.162

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  8 in total

1.  Evidence for a bicarbonate "escort" site in Haemophilus influenzae beta-carbonic anhydrase .

Authors:  Roger S Rowlett; Katherine M Hoffmann; Hannah Failing; Margaret M Mysliwiec; Dejan Samardzic
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

2.  Bioinformatic analysis of beta carbonic anhydrase sequences from protozoans and metazoans.

Authors:  Reza Zolfaghari Emameh; Harlan Barker; Martti E E Tolvanen; Csaba Ortutay; Seppo Parkkila
Journal:  Parasit Vectors       Date:  2014-01-21       Impact factor: 3.876

3.  Co(II)-substituted Haemophilus influenzae β-carbonic anhydrase: spectral evidence for allosteric regulation by pH and bicarbonate ion.

Authors:  Katherine M Hoffmann; Dejan Samardzic; Katherine van den Heever; Roger S Rowlett
Journal:  Arch Biochem Biophys       Date:  2011-04-22       Impact factor: 4.013

4.  Biochemistry and physiology of the β class carbonic anhydrase (Cpb) from Clostridium perfringens strain 13.

Authors:  R Siva Sai Kumar; William Hendrick; Jared B Correll; Andrew D Patterson; Stephen B Melville; James G Ferry
Journal:  J Bacteriol       Date:  2013-03-08       Impact factor: 3.490

5.  Nontypeable Haemophilus influenzae carbonic anhydrase is important for environmental and intracellular survival.

Authors:  Jeroen D Langereis; Aldert Zomer; Hendrik G Stunnenberg; Peter Burghout; Peter W M Hermans
Journal:  J Bacteriol       Date:  2013-04-05       Impact factor: 3.490

6.  Carbon Dioxide "Trapped" in a β-Carbonic Anhydrase.

Authors:  Mayank Aggarwal; Teck Khiang Chua; Melissa A Pinard; Doletha M Szebenyi; Robert McKenna
Journal:  Biochemistry       Date:  2015-10-16       Impact factor: 3.162

7.  Characterization of the first beta-class carbonic anhydrase from an arthropod (Drosophila melanogaster) and phylogenetic analysis of beta-class carbonic anhydrases in invertebrates.

Authors:  Leo Syrjänen; Martti Tolvanen; Mika Hilvo; Ayodeji Olatubosun; Alessio Innocenti; Andrea Scozzafava; Jenni Leppiniemi; Barbara Niederhauser; Vesa P Hytönen; Thomas A Gorr; Seppo Parkkila; Claudiu T Supuran
Journal:  BMC Biochem       Date:  2010-07-26       Impact factor: 4.059

Review 8.  An Overview of the Bacterial Carbonic Anhydrases.

Authors:  Claudiu T Supuran; Clemente Capasso
Journal:  Metabolites       Date:  2017-11-11
  8 in total

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