Literature DB >> 19455643

Novel clustering of items from the Autism Diagnostic Interview-Revised to define phenotypes within autism spectrum disorders.

Valerie W Hu1, Mara E Steinberg.   

Abstract

Heterogeneity in phenotypic presentation of Autism spectrum disorders has been cited as one explanation for the difficulty in pinpointing specific genes involved in autism. Recent studies have attempted to reduce the "noise" in genetic and other biological data by reducing the phenotypic heterogeneity of the sample population. The current study employs multiple clustering algorithms on 123 item scores from the Autism Diagnostic Interview-Revised (ADI-R) diagnostic instrument of nearly 2,000 autistic individuals to identify subgroups of autistic probands with clinically relevant behavioral phenotypes in order to isolate more homogeneous groups of subjects for gene expression analyses. Our combined cluster analyses suggest optimal division of the autistic probands into four phenotypic clusters based on similarity of symptom severity across the 123 selected item scores. One cluster is characterized by severe language deficits, while another exhibits milder symptoms across the domains. A third group possesses a higher frequency of savant skills while the fourth group exhibited intermediate severity across all domains. Grouping autistic individuals by multivariate cluster analysis of ADI-R scores reveals meaningful phenotypes of subgroups within the autistic spectrum, which we show, in a related (accompanying) study, to be associated with distinct gene expression profiles.

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Year:  2009        PMID: 19455643      PMCID: PMC2737479          DOI: 10.1002/aur.72

Source DB:  PubMed          Journal:  Autism Res        ISSN: 1939-3806            Impact factor:   5.216


  34 in total

1.  Validating clustering for gene expression data.

Authors:  K Y Yeung; D R Haynor; W L Ruzzo
Journal:  Bioinformatics       Date:  2001-04       Impact factor: 6.937

2.  Using the autism diagnostic interview--revised to increase phenotypic homogeneity in genetic studies of autism.

Authors:  Vanessa Hus; Andrew Pickles; Edwin H Cook; Susan Risi; Catherine Lord
Journal:  Biol Psychiatry       Date:  2007-02-15       Impact factor: 13.382

3.  Structure of the autism symptom phenotype: A proposed multidimensional model.

Authors:  Stelios Georgiades; Peter Szatmari; Lonnie Zwaigenbaum; Eric Duku; Susan Bryson; Wendy Roberts; Jeremy Goldberg; William Mahoney
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2007-02       Impact factor: 8.829

4.  Incorporating language phenotypes strengthens evidence of linkage to autism.

Authors:  Y Bradford; J Haines; H Hutcheson; M Gardiner; T Braun; V Sheffield; T Cassavant; W Huang; K Wang; V Vieland; S Folstein; S Santangelo; J Piven
Journal:  Am J Med Genet       Date:  2001-08-08

5.  Subtypes of language disorders in school-age children with autism.

Authors:  Isabelle Rapin; Michelle A Dunn; Michael A Dunn; Doris A Allen; Michael C Stevens; Deborah Fein
Journal:  Dev Neuropsychol       Date:  2009       Impact factor: 2.253

6.  The factor structure of autistic traits.

Authors:  John N Constantino; Christian P Gruber; Sandra Davis; Stephanie Hayes; Natalie Passanante; Thomas Przybeck
Journal:  J Child Psychol Psychiatry       Date:  2004-05       Impact factor: 8.982

7.  The structure of the Autism Diagnostic Interview-Revised: diagnostic and phenotypic implications.

Authors:  Anne V Snow; Luc Lecavalier; Carrie Houts
Journal:  J Child Psychol Psychiatry       Date:  2008-12-16       Impact factor: 8.982

8.  Exploratory subsetting of autism families based on savant skills improves evidence of genetic linkage to 15q11-q13.

Authors:  Erika L Nurmi; Michael Dowd; Ovsanna Tadevosyan-Leyfer; Jonathan L Haines; Susan E Folstein; James S Sutcliffe
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2003-07       Impact factor: 8.829

9.  A principal components analysis of the Autism Diagnostic Interview-Revised.

Authors:  Ovsanna Tadevosyan-Leyfer; Michael Dowd; Raymond Mankoski; Brian Winklosky; Sara Putnam; Lauren McGrath; Helen Tager-Flusberg; Susan E Folstein
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2003-07       Impact factor: 8.829

10.  Social and communication development in toddlers with early and later diagnosis of autism spectrum disorders.

Authors:  Rebecca J Landa; Katherine C Holman; Elizabeth Garrett-Mayer
Journal:  Arch Gen Psychiatry       Date:  2007-07
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  50 in total

1.  Gene expression profiling differentiates autism case-controls and phenotypic variants of autism spectrum disorders: evidence for circadian rhythm dysfunction in severe autism.

Authors:  Valerie W Hu; Tewarit Sarachana; Kyung Soon Kim; AnhThu Nguyen; Shreya Kulkarni; Mara E Steinberg; Truong Luu; Yinglei Lai; Norman H Lee
Journal:  Autism Res       Date:  2009-04       Impact factor: 5.216

2.  Newborn screening for autism: in search of candidate biomarkers.

Authors:  Gerald J Mizejewski; Barbara Lindau-Shepard; Kenneth A Pass
Journal:  Biomark Med       Date:  2013-04       Impact factor: 2.851

3.  Overcoming heterogeneity in pediatric asthma: tobacco smoke and asthma characteristics within phenotypic clusters in an African American cohort.

Authors:  Angela S Benton; Zuyi Wang; Jennifer Lerner; Matthew Foerster; Stephen J Teach; Robert J Freishtat
Journal:  J Asthma       Date:  2010-09       Impact factor: 2.515

4.  Quantitative analysis of heterogeneity in academic achievement of children with autism.

Authors:  Lang Chen; Daniel A Abrams; Miriam Rosenberg-Lee; Teresa Iuculano; Holly N Wakeman; Sandhya Prathap; Tianwen Chen; Vinod Menon
Journal:  Clin Psychol Sci       Date:  2018-11-14

5.  Exploring the relationship between autism spectrum disorder and epilepsy using latent class cluster analysis.

Authors:  Michael L Cuccaro; Roberto F Tuchman; Kara L Hamilton; Harry H Wright; Ruth K Abramson; Jonathan L Haines; John R Gilbert; Margaret Pericak-Vance
Journal:  J Autism Dev Disord       Date:  2012-08

6.  Comorbidity clusters in autism spectrum disorders: an electronic health record time-series analysis.

Authors:  Finale Doshi-Velez; Yaorong Ge; Isaac Kohane
Journal:  Pediatrics       Date:  2013-12-09       Impact factor: 7.124

7.  Classifying Autism Spectrum Disorders by ADI-R: Subtypes or Severity Gradient?

Authors:  Hannah Cholemkery; Juliane Medda; Thomas Lempp; Christine M Freitag
Journal:  J Autism Dev Disord       Date:  2016-07

8.  Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines.

Authors:  Tewarit Sarachana; Rulun Zhou; Guang Chen; Husseini K Manji; Valerie W Hu
Journal:  Genome Med       Date:  2010-04-07       Impact factor: 11.117

9.  Developing a Predictive Gene Classifier for Autism Spectrum Disorders Based upon Differential Gene Expression Profiles of Phenotypic Subgroups.

Authors:  Valerie W Hu; Yinglei Lai
Journal:  N Am J Med Sci (Boston)       Date:  2013

10.  Network-based analysis reveals stronger local diffusion-based connectivity and different correlations with oral language skills in brains of children with high functioning autism spectrum disorders.

Authors:  Hai Li; Zhong Xue; Timothy M Ellmore; Richard E Frye; Stephen T C Wong
Journal:  Hum Brain Mapp       Date:  2012-09-24       Impact factor: 5.038

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