Literature DB >> 19454221

Straight walk: a modified method of ligation-mediated genome walking for plant species with large genomes.

Tokuji Tsuchiya1, Nanako Kameya, Ikuo Nakamura.   

Abstract

Polymerase chain reaction (PCR)-based genome walking techniques are commonly used to clone unknown genomic regions flanking known sequences. However, these methods are typically problematic when applied to highly complex DNA templates isolated from plants with large genomes. Here we describe a reliable and efficient genome walking method that is particularly effective for plants with large genomes. Our ligation-mediated PCR method, Straight Walk, has improved sensitivity and specificity due to optimization of sequences of adaptors and adaptor primers. Successful genome walking in lily, which has one of the largest genomes in plants, indicates that Straight Walk is applicable for most plant species.

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Year:  2009        PMID: 19454221     DOI: 10.1016/j.ab.2009.02.002

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  9 in total

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Authors:  Naoki Muto; Kenji Komatsu; Takashi Matsumoto
Journal:  Plant Biotechnol (Tokyo)       Date:  2021-12-25       Impact factor: 1.133

2.  Genomic inversion caused by gamma irradiation contributes to downregulation of a WBC11 homolog in bloomless sorghum.

Authors:  Hiroshi Mizuno; Hiroyuki Kawahigashi; Jun Ogata; Hiroshi Minami; Hiroyuki Kanamori; Hitoshi Nakagawa; Takashi Matsumoto
Journal:  Theor Appl Genet       Date:  2013-03-06       Impact factor: 5.699

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Authors:  Satoshi Watanabe; Zhengjun Xia; Rumiko Hideshima; Yasutaka Tsubokura; Shusei Sato; Naoki Yamanaka; Ryoji Takahashi; Toyoaki Anai; Satoshi Tabata; Keisuke Kitamura; Kyuya Harada
Journal:  Genetics       Date:  2011-03-15       Impact factor: 4.562

4.  Revised selection criteria for candidate restriction enzymes in genome walking.

Authors:  Ali Taheri; Stephen J Robinson; Isobel Parkin; Margaret Y Gruber
Journal:  PLoS One       Date:  2012-04-11       Impact factor: 3.240

5.  A Simple Genome Walking Strategy to Isolate Unknown Genomic Regions Using Long Primer and RAPD Primer.

Authors:  Fajun Li; Chunpeng Fu; Qunfeng Li
Journal:  Iran J Biotechnol       Date:  2019-04-20       Impact factor: 1.671

6.  Development and characterization of marker-free and transgene insertion site-defined transgenic wheat with improved grain storability and fatty acid content.

Authors:  Xuemin Cao; Zhenying Dong; Dong Tian; Lingli Dong; Weiqiang Qian; Jinxing Liu; Xin Liu; Huanju Qin; Wenxue Zhai; Caixia Gao; Kunpu Zhang; Daowen Wang
Journal:  Plant Biotechnol J       Date:  2019-07-05       Impact factor: 9.803

7.  Expression of FcFT1, a FLOWERING LOCUS T-like gene, is regulated by light and associated with inflorescence differentiation in fig (Ficus carica L.).

Authors:  Hidetoshi Ikegami; Hitoshi Nogata; Yoshiaki Inoue; Shuichi Himeno; Hiroshi Yakushiji; Chiharu Hirata; Keita Hirashima; Masashi Mori; Mitsuo Awamura; Takao Nakahara
Journal:  BMC Plant Biol       Date:  2013-12-16       Impact factor: 4.215

8.  A Novel Reporter Rat Strain That Conditionally Expresses the Bright Red Fluorescent Protein tdTomato.

Authors:  Hiroyuki Igarashi; Kyo Koizumi; Ryosuke Kaneko; Keiko Ikeda; Ryo Egawa; Yuchio Yanagawa; Shin-Ichi Muramatsu; Hiroshi Onimaru; Toru Ishizuka; Hiromu Yawo
Journal:  PLoS One       Date:  2016-05-19       Impact factor: 3.240

9.  Stepwise partially overlapping primer-based PCR for genome walking.

Authors:  Kunpeng Chang; Qiong Wang; Xiaofei Shi; Shuixing Wang; Hongjing Wu; Lijuan Nie; Haixing Li
Journal:  AMB Express       Date:  2018-05-09       Impact factor: 3.298

  9 in total

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