| Literature DB >> 19453416 |
Francoise M Blachere1, William G Lindsley, James E Slaven, Brett J Green, Stacey E Anderson, Bean T Chen, Don H Beezhold.
Abstract
BACKGROUND: Influenza virus was used to characterize the efficacy of a cyclone-based, two-stage personal bioaerosol sampler for the collection and size fractionation of aerosolized viral particles.Entities:
Mesh:
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Year: 2007 PMID: 19453416 PMCID: PMC4941879 DOI: 10.1111/j.1750-2659.2007.00020.x
Source DB: PubMed Journal: Influenza Other Respir Viruses ISSN: 1750-2640 Impact factor: 4.380
Real‐time PCR primers and probes
| Influenza strain | Gene | Sense primer | Antisense primer | TaqMan TAMRA probe |
|---|---|---|---|---|
| H1N1 (A/NC/20/99) | HA | GGAACATCCCATCCATTCAATC | CCACCCCCCTTCAATGAAA | VIC‐AGAGGTTTGTTTGGAGCCATTGCCG |
| H3N2 (A/C/7/2004) | NA | CAAAGCCGCAATGTGACATT | CCACCAGCGGAAAGCCTAA | VIC‐CAGGATTTGCACCTTTTTCTAAGGACAATTCG |
| B (B/J/10/2003) | HA | AGGAACAAGGACCAGAGGGAAA | CCCAAGGCCACATCCAGAT | 6FAM‐TGTCCAGACTGTCTCAA |
| Fungal isolate | ||||
|
| rDNA | CGGCGGGGAGCCCT | CCATTGTTGAAAGTTTTGACTGATCTTA | VIC‐AGACTGCATCACTCTCAGGCATGAAGTTCAG |
Figure 1Relative number of H3N2 viral particles collected on the back‐up filters. FluMist® was aerosolized in the calm air chamber, samples were collected on filters of different composition after 40 minutes and analyzed using qPCR.
Figure 2Regression analysis of influenza particle accumulation over time. Values from three replicate experiments were combined and the average relative number of particles for each stage is presented. (A) H1N1; (B) H3N2 viral particles.
Figure 3Separation of aerosolized particles by stage. Spores of Aspergillus versicolor (107) and FluMist® were co‐aerosolized together into the calm air chamber. Samples were collected at 40 minutes and analyzed for influenza viruses using qPCR and A. versicolor using qPCR and hemacytometer counts. Data for each stage is presented as the percentage of total number of particles collected in the three stages. Spore counts were the average of eight replicate hemacytometer counts. Values for the FluMist® with no fungal spores were taken from the previous experiment presented in Table 2 and represent the combined average values for H1N1 and H3N2 strains.
Relative number of viral particles recovered
| Influenza strain | Time course (minutes) | |||
|---|---|---|---|---|
| 5 | 10 | 20 | 40 | |
| H1N1 (A/New Caledonia/20/99) | ||||
| Tube 1 | 5451 ± 2078* | 7169 ± 3100* | 9760 ± 7596* | 25 624 ± 7329 |
| Tube 2 | 8647 ± 2861* | 14 345 ± 3983* | 24 970 ± 6314* | 42 962 ± 14 161 |
| Backup filter | 7576 ± 1869* | 13 924 ± 2530* | 26 286 ± 11 716* | 43 412 ± 7507* |
| Reference filter | n/a | n/a | 58 279 ± 9174 | 100 964 ± 21 043 |
| Collection efficiency | n/a | n/a | 104.7% | 110.9% |
| H3N2 (A/California/7/2004) | ||||
| Tube 1 | 1106 ± 144* | 2603 ± 1441* | 2419 ± 1855* | 8366 ± 2426 |
| Tube 2 | 3113 ± 1398* | 4618 ± 1414* | 8793 ± 2964 | 12 530 ± 3829 |
| Backup filter | 2405 ± 1162* | 4104 ± 1847* | 7228 ± 1254* | 12 369 ± 2716 |
| Reference filter | n/a | n/a | 15 961 ± 6017 | 29 225 ± 9331 |
| Collection efficiency | n/a | n/a | 115.5% | 113.8% |
*Significance of time course where P < 0.05.
n/a, not applicable.