Literature DB >> 19453194

Atomic-level mapping of antibody epitopes on a GPCR.

Cheryl Paes1, Jada Ingalls, Karan Kampani, Chidananda Sulli, Esha Kakkar, Meredith Murray, Valery Kotelnikov, Tiffani A Greene, Joseph B Rucker, Benjamin J Doranz.   

Abstract

Epitopes that define the immunodominant regions of conformationally complex integral membrane proteins have been difficult to reliably delineate. Here, a high-throughput approach termed shotgun mutagenesis was used to map the binding epitopes of five different monoclonal antibodies targeting the GPCR CCR5. The amino acids, and in some cases the atoms, that comprise the critical contact points of each epitope were identified, defining the immunodominant structures of this GPCR and their physicochemistry.

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Year:  2009        PMID: 19453194      PMCID: PMC2943208          DOI: 10.1021/ja900186n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

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Authors:  R Mobini; Y Magnusson; G Wallukat; M Viguier; A Hjalmarson; J Hoebeke
Journal:  J Autoimmun       Date:  1999-09       Impact factor: 7.094

2.  Epitope mapping of CCR5 reveals multiple conformational states and distinct but overlapping structures involved in chemokine and coreceptor function.

Authors:  B Lee; M Sharron; C Blanpain; B J Doranz; J Vakili; P Setoh; E Berg; G Liu; H R Guy; S R Durell; M Parmentier; C N Chang; K Price; M Tsang; R W Doms
Journal:  J Biol Chem       Date:  1999-04-02       Impact factor: 5.157

3.  A critical site in the core of the CCR5 chemokine receptor required for binding and infectivity of human immunodeficiency virus type 1.

Authors:  S J Siciliano; S E Kuhmann; Y Weng; N Madani; M S Springer; J E Lineberger; R Danzeisen; M D Miller; M P Kavanaugh; J A DeMartino; D Kabat
Journal:  J Biol Chem       Date:  1999-01-22       Impact factor: 5.157

Review 4.  Anatomy of hot spots in protein interfaces.

Authors:  A A Bogan; K S Thorn
Journal:  J Mol Biol       Date:  1998-07-03       Impact factor: 5.469

5.  Regions in beta-chemokine receptors CCR5 and CCR2b that determine HIV-1 cofactor specificity.

Authors:  J Rucker; M Samson; B J Doranz; F Libert; J F Berson; Y Yi; R J Smyth; R G Collman; C C Broder; G Vassart; R W Doms; M Parmentier
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6.  The second extracellular loop of CCR5 contains the dominant epitopes for highly potent anti-human immunodeficiency virus monoclonal antibodies.

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Review 7.  Chemokine receptors as HIV-1 coreceptors: roles in viral entry, tropism, and disease.

Authors:  E A Berger; P M Murphy; J M Farber
Journal:  Annu Rev Immunol       Date:  1999       Impact factor: 28.527

8.  Extracellular cysteines of CCR5 are required for chemokine binding, but dispensable for HIV-1 coreceptor activity.

Authors:  C Blanpain; B Lee; J Vakili; B J Doranz; C Govaerts; I Migeotte; M Sharron; V Dupriez; G Vassart; R W Doms; M Parmentier
Journal:  J Biol Chem       Date:  1999-07-02       Impact factor: 5.157

9.  Differential inhibition of human immunodeficiency virus type 1 fusion, gp120 binding, and CC-chemokine activity by monoclonal antibodies to CCR5.

Authors:  W C Olson; G E Rabut; K A Nagashima; D N Tran; D J Anselma; S P Monard; J P Segal; D A Thompson; F Kajumo; Y Guo; J P Moore; P J Maddon; T Dragic
Journal:  J Virol       Date:  1999-05       Impact factor: 5.103

10.  CCR5 levels and expression pattern correlate with infectability by macrophage-tropic HIV-1, in vitro.

Authors:  L Wu; W A Paxton; N Kassam; N Ruffing; J B Rottman; N Sullivan; H Choe; J Sodroski; W Newman; R A Koup; C R Mackay
Journal:  J Exp Med       Date:  1997-05-05       Impact factor: 14.307

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  34 in total

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5.  Atomic-level functional model of dengue virus Envelope protein infectivity.

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Review 6.  Current approaches to fine mapping of antigen-antibody interactions.

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Review 7.  A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes.

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8.  Isolation of state-dependent monoclonal antibodies against the 12-transmembrane domain glucose transporter 4 using virus-like particles.

Authors:  David F Tucker; Jonathan T Sullivan; Kimberly-Anne Mattia; Christine R Fisher; Trevor Barnes; Manu N Mabila; Rona Wilf; Chidananda Sulli; Meghan Pitts; Riley J Payne; Moniquetta Hall; Duncan Huston-Paterson; Xiaoxiang Deng; Edgar Davidson; Sharon H Willis; Benjamin J Doranz; Ross Chambers; Joseph B Rucker
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9.  High-Throughput Protein Engineering Improves the Antigenicity and Stability of Soluble HIV-1 Envelope Glycoprotein SOSIP Trimers.

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Review 10.  HCV E2 core structures and mAbs: something is still missing.

Authors:  Matteo Castelli; Nicola Clementi; Giuseppe A Sautto; Jennifer Pfaff; Kristen M Kahle; Trevor Barnes; Benjamin J Doranz; Matteo Dal Peraro; Massimo Clementi; Roberto Burioni; Nicasio Mancini
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