Literature DB >> 19451627

Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae).

André S Chanderbali1, Victor A Albert, Jim Leebens-Mack, Naomi S Altman, Douglas E Soltis, Pamela S Soltis.   

Abstract

The debate on the origin and evolution of flowers has recently entered the field of developmental genetics, with focus on the design of the ancestral floral regulatory program. Flowers can differ dramatically among angiosperm lineages, but in general, male and female reproductive organs surrounded by a sterile perianth of sepals and petals constitute the basic floral structure. However, the basal angiosperm lineages exhibit spectacular diversity in the number, arrangement, and structure of floral organs, whereas the evolutionarily derived monocot and eudicot lineages share a far more uniform floral ground plan. Here we show that broadly overlapping transcriptional programs characterize the floral transcriptome of the basal angiosperm Persea americana (avocado), whereas floral gene expression domains are considerably more organ specific in the model eudicot Arabidopsis thaliana. Our findings therefore support the "fading borders" model for organ identity determination in basal angiosperm flowers and extend it from the action of regulatory genes to downstream transcriptional programs. Furthermore, the declining expression of components of the staminal transcriptome in central and peripheral regions of Persea flowers concurs with elements of a previous hypothesis for developmental regulation in a gymnosperm "floral progenitor." Accordingly, in contrast to the canalized organ-specific regulatory apparatus of Arabidopsis, floral development may have been originally regulated by overlapping transcriptional cascades with fading gradients of influence from focal to bordering organs.

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Year:  2009        PMID: 19451627      PMCID: PMC2683881          DOI: 10.1073/pnas.0811476106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

Review 1.  The ABCs of floral evolution.

Authors:  H Ma; C dePamphilis
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

2.  Plant biology. Floral quartets.

Authors:  G Theissen; H Saedler
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

3.  Java Treeview--extensible visualization of microarray data.

Authors:  Alok J Saldanha
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

4.  Genome-wide analysis of spatial gene expression in Arabidopsis flowers.

Authors:  Frank Wellmer; José Luis Riechmann; Márcio Alves-Ferreira; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2004-04-20       Impact factor: 11.277

5.  Open source clustering software.

Authors:  M J L de Hoon; S Imoto; J Nolan; S Miyano
Journal:  Bioinformatics       Date:  2004-02-10       Impact factor: 6.937

6.  Linear models and empirical bayes methods for assessing differential expression in microarray experiments.

Authors:  Gordon K Smyth
Journal:  Stat Appl Genet Mol Biol       Date:  2004-02-12

7.  Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms.

Authors:  Michael J Moore; Charles D Bell; Pamela S Soltis; Douglas E Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

Review 8.  The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression.

Authors:  Douglas E Soltis; Hong Ma; Michael W Frohlich; Pamela S Soltis; Victor A Albert; David G Oppenheimer; Naomi S Altman; Claude dePamphilis; Jim Leebens-Mack
Journal:  Trends Plant Sci       Date:  2007-07-19       Impact factor: 18.313

9.  Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns.

Authors:  Robert K Jansen; Zhengqiu Cai; Linda A Raubeson; Henry Daniell; Claude W Depamphilis; James Leebens-Mack; Kai F Müller; Mary Guisinger-Bellian; Rosemarie C Haberle; Anne K Hansen; Timothy W Chumley; Seung-Bum Lee; Rhiannon Peery; Joel R McNeal; Jennifer V Kuehl; Jeffrey L Boore
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

10.  Global identification of target genes regulated by APETALA3 and PISTILLATA floral homeotic gene action.

Authors:  Moriyah Zik; Vivian F Irish
Journal:  Plant Cell       Date:  2003-01       Impact factor: 11.277

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  19 in total

1.  Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower.

Authors:  André S Chanderbali; Mi-Jeong Yoo; Laura M Zahn; Samuel F Brockington; P Kerr Wall; Matthew A Gitzendanner; Victor A Albert; James Leebens-Mack; Naomi S Altman; Hong Ma; Claude W dePamphilis; Douglas E Soltis; Pamela S Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

2.  Virus-induced gene silencing (VIGS) in Cysticapnos vesicaria, a zygomorphic-flowered Papaveraceae (Ranunculales, basal eudicots).

Authors:  Oriane Hidalgo; Conny Bartholmes; Stefan Gleissberg
Journal:  Ann Bot       Date:  2012-02-02       Impact factor: 4.357

Review 3.  Evolution of floral diversity: genomics, genes and gamma.

Authors:  Andre S Chanderbali; Brent A Berger; Dianella G Howarth; Douglas E Soltis; Pamela S Soltis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

4.  Analysis of the APETALA3- and PISTILLATA-like genes in Hedyosmum orientale (Chloranthaceae) provides insight into the evolution of the floral homeotic B-function in angiosperms.

Authors:  Shujun Liu; Yonghua Sun; Xiaoqiu Du; Qijiang Xu; Feng Wu; Zheng Meng
Journal:  Ann Bot       Date:  2013-08-16       Impact factor: 4.357

5.  Expression of floral MADS-box genes in Sinofranchetia chinensis (Lardizabalaceae): implications for the nature of the nectar leaves.

Authors:  Jin Hu; Jian Zhang; Hongyan Shan; Zhiduan Chen
Journal:  Ann Bot       Date:  2012-05-31       Impact factor: 4.357

6.  Within and between whorls: comparative transcriptional profiling of Aquilegia and Arabidopsis.

Authors:  Claudia Voelckel; Justin O Borevitz; Elena M Kramer; Scott A Hodges
Journal:  PLoS One       Date:  2010-03-23       Impact factor: 3.240

7.  Co-option of wing-patterning genes underlies the evolution of the treehopper helmet.

Authors:  Cera R Fisher; Jill L Wegrzyn; Elizabeth L Jockusch
Journal:  Nat Ecol Evol       Date:  2019-12-09       Impact factor: 15.460

8.  Comparative transcriptional profiling provides insights into the evolution and development of the zygomorphic flower of Vicia sativa (Papilionoideae).

Authors:  Zhipeng Liu; Lichao Ma; Zhibiao Nan; Yanrong Wang
Journal:  PLoS One       Date:  2013-02-21       Impact factor: 3.240

9.  Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Authors:  Laura M Zahn; Xuan Ma; Naomi S Altman; Qing Zhang; P Kerr Wall; Donglan Tian; Cynthia J Gibas; Raad Gharaibeh; James H Leebens-Mack; Claude W Depamphilis; Hong Ma
Journal:  Genome Biol       Date:  2010-10-15       Impact factor: 13.583

10.  Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

Authors:  Enrique Ibarra-Laclette; Alfonso Méndez-Bravo; Claudia Anahí Pérez-Torres; Victor A Albert; Keithanne Mockaitis; Aruna Kilaru; Rodolfo López-Gómez; Jacob Israel Cervantes-Luevano; Luis Herrera-Estrella
Journal:  BMC Genomics       Date:  2015-08-13       Impact factor: 3.969

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