Literature DB >> 19449916

A diabatic three-state representation of photoisomerization in the green fluorescent protein chromophore.

Seth Olsen1, Ross H McKenzie.   

Abstract

We give a quantum chemical description of the photoisomerization reaction of green fluorescent protein (GFP) chromophores using a representation over three diabatic states. Photoisomerization leads to nonradiative decay, and competes with fluorescence in these systems. In the protein, this pathway is suppressed, leading to fluorescence. Understanding the electronic states relevant to photoisomerization is a prerequisite to understanding how the protein suppresses it, and preserves the emitting state of the chromophore. We present a solution to the state-averaged complete active space problem, which is spanned at convergence by three fragment-localized orbitals. We generate the diabatic-state representation by block diagonalization transformation of the Hamiltonian calculated for the anionic chromophore model HBDI with multireference, multistate perturbation theory. The diabatic states are charge localized and admit a natural valence-bond interpretation. At planar geometries, the diabatic picture of the optical excitation reduces to the canonical two-state charge-transfer resonance of the anion. Extension to a three-state model is necessary to describe decay via two possible pathways associated with photoisomerization of the (methine) bridge. Parametric Hamiltonians based on the three-state ansatz can be fit directly to data generated using the underlying active space. We provide an illustrative example of such a parametric Hamiltonian.

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Year:  2009        PMID: 19449916     DOI: 10.1063/1.3121324

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  On the origin of fluorescence in bacteriophytochrome infrared fluorescent proteins.

Authors:  Alex A Samma; Chelsea K Johnson; Shuang Song; Samuel Alvarez; Marc Zimmer
Journal:  J Phys Chem B       Date:  2010-11-03       Impact factor: 2.991

2.  Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.

Authors:  Chi-Yun Lin; Matthew G Romei; Luke M Oltrogge; Irimpan I Mathews; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2019-09-11       Impact factor: 15.419

3.  Electrostatic control of photoisomerization pathways in proteins.

Authors:  Matthew G Romei; Chi-Yun Lin; Irimpan I Mathews; Steven G Boxer
Journal:  Science       Date:  2020-01-03       Impact factor: 47.728

4.  Computer modeling of the structure and spectra of fluorescent proteins.

Authors:  A V Nemukhin; B L Grigorenko; A P Savitsky
Journal:  Acta Naturae       Date:  2009-07       Impact factor: 1.845

5.  Internal conversion of the anionic GFP chromophore: in and out of the I-twisted S1/S0 conical intersection seam.

Authors:  Nanna H List; Chey M Jones; Todd J Martínez
Journal:  Chem Sci       Date:  2021-12-08       Impact factor: 9.825

  5 in total

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