| Literature DB >> 19440467 |
Ruth Holm1, Irene Kraus, Hanne Skomedal, Anita Langerød, Gunnar B Kristensen, Heidi Lyng.
Abstract
The prognostic significance of human papillomavirus (HPV) DNA and E6/E7 mRNA, the presence of specific types, and the physical state of HPV DNA, were studied in 202 cervical squamous cell carcinomas. Absence or non-detectable levels of high-risk (types 16, 18, 31, 33, 35, 45, 52 and 58) E6/E7 mRNA, using the real-time nucleic acid sequence based amplification (NASBA) assay, and absence of HPV high-risk/HPV 6, 26, 66, 69, 73 (all methods collectively) were associated with poor overall survival in univariate analysis (P = 0.04 and P = 0.03, respectively) and had independent prognostic value in multivariate analysis (P = 0.01 and P = 0.03, respectively) including FIGO stage and age. Based on the individual results of type-specific PCR and in situ hybridization (ISH), the presence of HPV DNA was not found to be a prognostic factor. Likewise, concerning the presence of specific HPV types and the HPV integration status (determined by ISH), no prognostic significance was found. Mutation analyses of the TP53 gene revealed mutations in 3 of the 6 HPV negative samples (50%).Entities:
Year: 2008 PMID: 19440467 PMCID: PMC2678819 DOI: 10.2174/1874357900802010074
Source DB: PubMed Journal: Open Virol J ISSN: 1874-3579
HPV Detection in Relation to Method and Clinico-Pathological Variables
| Variables | No. of Cases | NASBA | Type-Specific PCR | ISH |
|---|---|---|---|---|
| ≤ 50 | 85 | 83 (97.6) | 81 (95.3) | 69 (81.2) |
| 51-70 | 67 | 59 (88.0) | 61 (91.0) | 51 (76.2) |
| >70 | 50 | 44 (88.0) | 44 (88.0) | 38 (76.0) |
| I (IA-IB) | 58 | 54 (93.1) | 54 (93.1) | 46 (79.3) |
| II (IIA-IIB) | 82 | 77 (93.9) | 76 (92.7) | 63 (76.8) |
| III (IIIA-IIIB) | 40 | 34 (85.0) | 35 (87.5) | 32 (80.0) |
| IV (IVA-IVB) | 22 | 21 (95.5) | 21 (95.5) | 17 (77.3) |
NASBA: Nucleic acid sequence based amplification; HPV 16, 18, 31, 33, 35, 45, 52, and 58 E6/E7 mRNA [25].
PCR: Polymerase chain reaction; HPV 16, 18, 31, 33, 35, 45, 52, and 58 DNA [25].
ISH: In situ hybridization; HPV 16, 18, 31 and 33 DNA [25].
TP53 Gene Sequencing Primers
| Exons | Forward Primer (5’) | Reverse Primer (3’) | PCR Fragment Length (bp) |
|---|---|---|---|
| 2,3 | 586 | ||
| 4 | 593 | ||
| 5,6 | 588 | ||
| 7 | 595 | ||
| 8,9 | 733 | ||
| 10 | 396 | ||
| 11 | 500 |
All primers are linked to universal M13 sequences in the 5` position:
M13F: TGT AAA ACG ACG GCC AGT (forward).
M13R: CAG GAA ACA GCT ATG ACC (reverse).
Groups for Statistical Evaluation. The Different HPV Detection Methods were Evaluated Either Individually (I) and/or Collectively (C)
| 1 | High-risk HPV positive | I + C |
| 2 | HPV 16 | I + C |
| 3 | HPV 16 | I + C |
| 4 | HPV 18 | I + C |
| 5 | HPV 16/18 | I + C |
| 6 | HPV 16 | I + C |
| 7 | HPV 16 | I + C |
| 8 | High-risk HPV | C |
| 9 | HPV 6, 26, 66, 69, 73 | C |
| 10 | Single | C |
| 11 | HPV punctuate signal | I (ISH) |
| 12 | HPV 16 punctuate signal | I (ISH) |
High-risk HPV = HPV 16, 18, 31, 33, 35, 45, 52 and 58.
Association Between HPV DNA and mRNA
| NASBA | Type-Specific PCR | ||
|---|---|---|---|
| HPV Negative | HPV Positive | Total | |
| HPV negative | 14 | 2 | 16 |
| HPV positive | 2 | 184 | 186 |
| Total | 16 | 186 | 202 |
NASBA: Nucleic acid sequence based amplification; HPV 16, 18, 31, 33, 35, 45, 52, and 58 E6/E7 mRNA [25].
PCR: Polymerase chain reaction; HPV 16, 18, 31, 33, 35, 45, 52, and 58 DNA [25].
Mutation Analysis of the TP53 Gene in HPV Negative SCCs.
| Sample | Affected Exon | Affected Codon | Codon Alteration | Amino Acid Alteration | HGVS Nomenclature | |
|---|---|---|---|---|---|---|
| 3596 | Mut | 7 | 245 | GGC→AGC | Gly→Ser | c.733G>A |
| 3655 | Mut | 5 | 177 | CCC→TCC | Pro→Ser | c.529C>T |
| 3754 | WT | |||||
| 3951 | WT | |||||
| 3952 | WT | |||||
| 3957 | Mut | 5 | 141 | TGC→TGA | Cys→Stop | c.423C>A |
Mut = Mutation.
WT = Wild type.
Cox Regression Analysis of Disease Specific Survival (DSS) and Progression Free Survival (PFS)
| Variables | Univariate Analysis | Multivariate Analysis | ||||
|---|---|---|---|---|---|---|
| HR | 95%CI | HR | 95%CI | |||
| FIGO stage | 2.2 | 1.72-2.74 | <0.001 | 2.22 | 1.75-2.81 | <0.001 |
| Age group | 1.7 | 1.30-2.27 | <0.001 | |||
| Collective (HPV HR | 1.7 | 1.05-2.82 | 0.03 | 3.24 | 1.14-9.19 | 0.03 |
| NASBA (HPV HR pos | 2.1 | 1.05-4.28 | 0.04 | 2.42 | 1.20-4.88 | 0.01 |
| FIGO stage | 2.1 | 1.68-2.66 | <0.001 | 2.11 | 1.68-2.66 | <0.001 |
| Age group | 1.4 | 1.10-1.90 | 0.008 | |||
Hazard risk.
95% confidence interval of the hazard risk.
HR = high-risk HPV 16, 18, 31, 33, 35, 45, 52 and 58.
X = HPV 6, 26, 66, 69 and 73.
In the multivariate analysis two groups HPV HR/X vs HPV neg were tested.
Pos = positive; neg = negative.