Literature DB >> 19439030

Ribosomal footprints on a transcriptome landscape.

David R Morris1.   

Abstract

Next-generation massively parallel sequencing technology provides a powerful new means of assessing rates and regulation of translation across an entire transcriptome.

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Year:  2009        PMID： 19439030      PMCID： PMC2688920          DOI： 10.1186/gb-2009-10-4-215

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  16 in total

Review 1.  Translational regulation of GCN4 and the general amino acid control of yeast.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

2.  Role of the transcription activator Ste12p as a repressor of PRY3 expression.

Authors:  Kellie S Bickel; David R Morris
Journal:  Mol Cell Biol       Date:  2006-08-28       Impact factor: 4.272

3.  Next-generation DNA sequencing.

Authors:  Jay Shendure; Hanlee Ji
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

4.  The beginning of the end for microarrays?

Authors:  Jay Shendure
Journal:  Nat Methods       Date:  2008-07       Impact factor: 28.547

5.  Alpha and beta globin messenger ribonucleic acid. Different amounts and rates of initiation of translation.

Authors:  H F Lodish
Journal:  J Biol Chem       Date:  1971-12-10       Impact factor: 5.157

6.  Serial analysis of gene expression.

Authors:  V E Velculescu; L Zhang; B Vogelstein; K W Kinzler
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

7.  Human let-7a miRNA blocks protein production on actively translating polyribosomes.

Authors:  Stephanie Nottrott; Martin J Simard; Joel D Richter
Journal:  Nat Struct Mol Biol       Date:  2006-11-26       Impact factor: 15.369

8.  Discriminatory ribosome rebinding of isolated regions of protein synthesis initiation from the ribonucleic acid of bacteriophage R17.

Authors:  J A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  1973-09       Impact factor: 11.205

Review 9.  Transcriptome content and dynamics at single-nucleotide resolution.

Authors:  Nicole Cloonan; Sean M Grimmond
Journal:  Genome Biol       Date:  2008-09-18       Impact factor: 13.583

10.  The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders.

Authors:  G Lynn Law; Kellie S Bickel; Vivian L MacKay; David R Morris
Journal:  Genome Biol       Date:  2006-01-03       Impact factor: 13.583
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  8 in total

1.  Analysis of translation initiation during stress conditions by polysome profiling.

Authors:  Laëtitia Coudert; Pauline Adjibade; Rachid Mazroui
Journal:  J Vis Exp       Date:  2014-05-19       Impact factor: 1.355

2.  Phenotype selection reveals coevolution of muscle glycogen and protein and PTEN as a gate keeper for the accretion of muscle mass in adult female mice.

Authors:  Mandy Sawitzky; Anja Zeissler; Martina Langhammer; Maximilian Bielohuby; Peggy Stock; Harald M Hammon; Solvig Görs; Cornelia C Metges; Barbara J M Stoehr; Martin Bidlingmaier; Carolin Fromm-Dornieden; Bernhard G Baumgartner; Bruno Christ; Bertram Brenig; Gerhard Binder; Friedrich Metzger; Ulla Renne; Andreas Hoeflich
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

Review 3.  New levels of sophistication in the transcriptional landscape of bacteria.

Authors:  Arnoud Hm van Vliet; Brendan W Wren
Journal:  Genome Biol       Date:  2009-08-03       Impact factor: 13.583

Review 4.  Functional Integration of mRNA Translational Control Programs.

Authors:  Melanie C MacNicol; Chad E Cragle; Karthik Arumugam; Bruno Fosso; Graziano Pesole; Angus M MacNicol
Journal:  Biomolecules       Date:  2015-07-21

5.  High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.

Authors:  Nerea Irigoyen; Andrew E Firth; Joshua D Jones; Betty Y-W Chung; Stuart G Siddell; Ian Brierley
Journal:  PLoS Pathog       Date:  2016-02-26       Impact factor: 6.823

6.  Analysis of metabolic disturbances attributable to sepsis-induced myocardial dysfunction using metabolomics and transcriptomics techniques.

Authors:  Xiaonan Jia; Yahui Peng; Xiaohui Ma; Xiaowei Liu; Kaijiang Yu; Changsong Wang
Journal:  Front Mol Biosci       Date:  2022-08-15

7.  Genome-wide approaches to dissect the roles of RNA binding proteins in translational control: implications for neurological diseases.

Authors:  Katannya Kapeli; Gene W Yeo
Journal:  Front Neurosci       Date:  2012-10-02       Impact factor: 4.677

8.  The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis.

Authors:  Betty Y Chung; Thomas J Hardcastle; Joshua D Jones; Nerea Irigoyen; Andrew E Firth; David C Baulcombe; Ian Brierley
Journal:  RNA       Date:  2015-08-18       Impact factor: 4.942
  8 in total

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