Literature DB >> 19438234

S K-edge XAS and DFT calculations on cytochrome P450: covalent and ionic contributions to the cysteine-Fe bond and their contribution to reactivity.

Abhishek Dey1, Yonging Jiang, Paul Ortiz de Montellano, Keith O Hodgson, Britt Hedman, Edward I Solomon.   

Abstract

Experimental covalencies of the Fe-S bond for the resting low-spin and substrate-bound high-spin active site of cytochrome P450 are reported. DFT calculations on the active site indicate that one H-bonding interaction from the protein backbone is needed to reproduce the experimental values. The H-bonding to the thiolate from the backbone decreases the anisotropic pi covalency of the Fe-S bond lowering the barrier of free rotation of the exchangeable axial ligand, which is important for reactivity. The anionic axial thiolate ligand is calculated to lower the Fe(III/II) reduction potential of the active site by more than 1 V compared to a neutral imidazole ligand. About half of this derives from its covalent bonding and half from its electrostatic interaction with the oxidized Fe. This axial thiolate ligand increases the pK(a) of compound 0 (Fe(III)-hydroperoxo) favoring its protonation which promotes O-O bond heterolysis forming compound I. The reactivity of compound I is calculated to be relatively insensitive to the nature of the axial ligand due to opposing reduction potential and proton affinity contributions to the H-atom abstraction energy.

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Year:  2009        PMID: 19438234      PMCID: PMC2734335          DOI: 10.1021/ja901868q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

1.  Role of the heme active site and protein environment in structure, spectra, and function of the cytochrome p450s.

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Journal:  Chem Rev       Date:  2000-02-09       Impact factor: 60.622

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Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Preliminary characterization and crystal structure of a thermostable cytochrome P450 from Thermus thermophilus.

Authors:  Jason K Yano; Francesca Blasco; Huiying Li; Rolf D Schmid; Anke Henne; Thomas L Poulos
Journal:  J Biol Chem       Date:  2002-10-24       Impact factor: 5.157

Review 4.  Structure and chemistry of cytochrome P450.

Authors:  Ilia G Denisov; Thomas M Makris; Stephen G Sligar; Ilme Schlichting
Journal:  Chem Rev       Date:  2005-06       Impact factor: 60.622

5.  Hydrogen Atom Abstraction by Permanganate: Oxidations of Arylalkanes in Organic Solvents.

Authors:  Kimberly A. Gardner; Linda L. Kuehnert; James M. Mayer
Journal:  Inorg Chem       Date:  1997-05-07       Impact factor: 5.165

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Journal:  Biochemistry       Date:  1976-11-30       Impact factor: 3.162

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Authors:  R Raag; T L Poulos
Journal:  Biochemistry       Date:  1989-01-24       Impact factor: 3.162

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Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

9.  Roles of the proximal heme thiolate ligand in cytochrome p450(cam).

Authors:  K Auclair; P Moënne-Loccoz; P R Ortiz de Montellano
Journal:  J Am Chem Soc       Date:  2001-05-30       Impact factor: 15.419

10.  Kinetics of cytochrome P-450 reduction: evidence for faster reduction of the high-spin ferric state.

Authors:  W L Backes; P P Tamburini; I Jansson; G G Gibson; S G Sligar; J B Schenkman
Journal:  Biochemistry       Date:  1985-09-10       Impact factor: 3.162

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  12 in total

1.  Proximal ligand electron donation and reactivity of the cytochrome P450 ferric-peroxo anion.

Authors:  Santhosh Sivaramakrishnan; Hugues Ouellet; Hirotoshi Matsumura; Shenheng Guan; Pierre Moënne-Loccoz; Alma L Burlingame; Paul R Ortiz de Montellano
Journal:  J Am Chem Soc       Date:  2012-04-04       Impact factor: 15.419

2.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

3.  Density Functional Theory Calculations on Fe-O and O-O Cleavage of Ferric Hydroperoxide Species: Role of axial ligand and spin state.

Authors:  Abhishek Dey; Edward I Solomon
Journal:  Inorganica Chim Acta       Date:  2010-10-15       Impact factor: 2.545

Review 4.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

5.  Driving force for oxygen-atom transfer by heme-thiolate enzymes.

Authors:  Xiaoshi Wang; Sebastian Peter; René Ullrich; Martin Hofrichter; John T Groves
Journal:  Angew Chem Int Ed Engl       Date:  2013-07-03       Impact factor: 15.336

6.  Elucidating the role of the proximal cysteine hydrogen-bonding network in ferric cytochrome P450cam and corresponding mutants using magnetic circular dichroism spectroscopy.

Authors:  Mary Grace I Galinato; Tatyana Spolitak; David P Ballou; Nicolai Lehnert
Journal:  Biochemistry       Date:  2011-01-21       Impact factor: 3.162

7.  Quantum mechanically derived AMBER-compatible heme parameters for various states of the cytochrome P450 catalytic cycle.

Authors:  Kiumars Shahrokh; Anita Orendt; Garold S Yost; Thomas E Cheatham
Journal:  J Comput Chem       Date:  2011-10-14       Impact factor: 3.376

8.  Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

Authors:  Ryan G Hadt; Ning Sun; Nicholas M Marshall; Keith O Hodgson; Britt Hedman; Yi Lu; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

9.  Significantly shorter Fe-S bond in cytochrome P450-I is consistent with greater reactivity relative to chloroperoxidase.

Authors:  Courtney M Krest; Alexey Silakov; Jonathan Rittle; Timothy H Yosca; Elizabeth L Onderko; Julio C Calixto; Michael T Green
Journal:  Nat Chem       Date:  2015-08-03       Impact factor: 24.427

10.  How Do Ring Size and π-Donating Thiolate Ligands Affect Redox-Active, α-Imino-N-heterocycle Ligand Activation?

Authors:  Benjamin K Leipzig; Julian A Rees; Joanna K Kowalska; Roslyn M Theisen; Matjaž Kavčič; Penny Chaau Yan Poon; Werner Kaminsky; Serena DeBeer; Eckhard Bill; Julie A Kovacs
Journal:  Inorg Chem       Date:  2018-02-07       Impact factor: 5.436

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