Literature DB >> 19435746

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

G L Papadopoulos1, P Alexiou, M Maragkakis, M Reczko, A G Hatzigeorgiou.   

Abstract

SUMMARY: DIANA-mirPath is a web-based computational tool developed to identify molecular pathways potentially altered by the expression of single or multiple microRNAs. The software performs an enrichment analysis of multiple microRNA target genes comparing each set of microRNA targets to all known KEGG pathways. The combinatorial effect of co-expressed microRNAs in the modulation of a given pathway is taken into account by the simultaneous analysis of multiple microRNAs. The graphical output of the program provides an overview of the parts of the pathway modulated by microRNAs, facilitating the interpretation and presentation of the analysis results. AVAILABILITY: The software is available at http://microrna.gr/mirpath and is free for all users with no login or download requirement.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19435746     DOI: 10.1093/bioinformatics/btp299

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  140 in total

1.  Alteration in miRNA gene expression pattern in acute promyelocytic leukemia cell induced by arsenic trioxide: a possible mechanism to explain arsenic multi-target action.

Authors:  Seyed H Ghaffari; Davood Bashash; Majid Zaki Dizaji; Ardeshir Ghavamzadeh; Kamran Alimoghaddam
Journal:  Tumour Biol       Date:  2011-11-10

2.  Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis.

Authors:  Charlotte Angerstein; Michael Hecker; Brigitte Katrin Paap; Dirk Koczan; Madhan Thamilarasan; Hans-Jürgen Thiesen; Uwe Klaus Zettl
Journal:  Mol Neurobiol       Date:  2012-05-02       Impact factor: 5.590

3.  microRNA-34c is a novel target to treat dementias.

Authors:  Athanasios Zovoilis; Hope Y Agbemenyah; Roberto C Agis-Balboa; Roman M Stilling; Dieter Edbauer; Pooja Rao; Laurent Farinelli; Ivana Delalle; Andrea Schmitt; Peter Falkai; Sanaz Bahari-Javan; Susanne Burkhardt; Farahnaz Sananbenesi; Andre Fischer
Journal:  EMBO J       Date:  2011-09-23       Impact factor: 11.598

4.  Effect of (S)-3,5-DHPG on microRNA expression in mouse brain.

Authors:  Theresa A Lusardi; Simon J Thompson; Ian C MacDonald; Jing-Quan Lan; Panos Theofilas; Julie A Saugstad
Journal:  Exp Neurol       Date:  2012-01-28       Impact factor: 5.330

5.  Muscle specific microRNAs are regulated by endurance exercise in human skeletal muscle.

Authors:  Søren Nielsen; Camilla Scheele; Christina Yfanti; Thorbjörn Akerström; Anders R Nielsen; Bente K Pedersen; Matthew J Laye; Matthew Laye
Journal:  J Physiol       Date:  2010-10-15       Impact factor: 5.182

6.  MicroRNA-142-3p and microRNA-142-5p are downregulated in hepatocellular carcinoma and exhibit synergistic effects on cell motility.

Authors:  Felice Ho-Ching Tsang; Sandy Leung-Kuen Au; Lai Wei; Dorothy Ngo-Yin Fan; Joyce Man-Fong Lee; Carmen Chak-Lui Wong; Irene Oi-Lin Ng; Chun-Ming Wong
Journal:  Front Med       Date:  2015-08-19       Impact factor: 4.592

7.  Global analysis of serum microRNAs as potential biomarkers for lung adenocarcinoma.

Authors:  Sweta Rani; Kathy Gately; John Crown; Ken O'Byrne; Lorraine O'Driscoll
Journal:  Cancer Biol Ther       Date:  2013-09-04       Impact factor: 4.742

8.  New miRNAs network in human mesenchymal stem cells derived from skin and amniotic fluid.

Authors:  R Lazzarini; G Sorgentoni; M Caffarini; M A Sayeed; F Olivieri; R Di Primio; M Orciani
Journal:  Int J Immunopathol Pharmacol       Date:  2015-12-18       Impact factor: 3.219

9.  MicroRNA-374a activates Wnt/β-catenin signaling to promote breast cancer metastasis.

Authors:  Junchao Cai; Hongyu Guan; Lishan Fang; Yi Yang; Xun Zhu; Jie Yuan; Jueheng Wu; Mengfeng Li
Journal:  J Clin Invest       Date:  2013-01-16       Impact factor: 14.808

10.  VDR regulation of microRNA differs across prostate cell models suggesting extremely flexible control of transcription.

Authors:  Prashant K Singh; Mark D Long; Sebastiano Battaglia; Qiang Hu; Song Liu; Lara E Sucheston-Campbell; Moray J Campbell
Journal:  Epigenetics       Date:  2015-01-29       Impact factor: 4.528

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.