Literature DB >> 19431695

A General Method for Modeling Macromolecular Shape in Solution: A Graphical (II-G) Intersection Procedure for Triaxial Ellipsoids.

S E Harding.   

Abstract

A general method for modeling macromolecular shape in solution is described involving measurements of viscosity, radius of gyration, and the second thermodynamic virial coefficient. The method, which should be relatively straightforward to apply, does not suffer from uniqueness problems, involves shape functions that are independent of hydration, and models the gross conformation of the macromolecule in solution as a general triaxial ellipsoid. The method is illustrated by application to myosin, and the relevance and applicability of ellipsoid modeling to biological structures is discussed.

Entities:  

Year:  1987        PMID: 19431695      PMCID: PMC1329939          DOI: 10.1016/S0006-3495(87)83392-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  Frictional coefficients of multisubunit structures. I. Theory.

Authors:  V Bloomfield; W O Dalton; K E Van Holde
Journal:  Biopolymers       Date:  1967-02       Impact factor: 2.505

2.  Hydrodynamic properties of a rigid molecule: rotational and linear diffusion and fluorescence anisotropy.

Authors:  E W Small; I Isenberg
Journal:  Biopolymers       Date:  1977-09       Impact factor: 2.505

3.  Molecular modelling of human complement subcomponent C1q and its complex with C1r2C1s2 derived from neutron-scattering curves and hydrodynamic properties.

Authors:  S J Perkins
Journal:  Biochem J       Date:  1985-05-15       Impact factor: 3.857

4.  Small-angle light scattering of bioparticles. 3. Vaccinia virus.

Authors:  R J Fiel; E H Mark; B R Munson
Journal:  Arch Biochem Biophys       Date:  1970-12       Impact factor: 4.013

5.  Modeling biological macromolecules in solution. II. The general tri-axial ellipsoid.

Authors:  S E Harding; A J Rowe
Journal:  Biopolymers       Date:  1983-07       Impact factor: 2.505

6.  Hydrodynamic studies on the self association of vertebrate skeletal muscle myosin.

Authors:  C H Emes; A J Rowe
Journal:  Biochim Biophys Acta       Date:  1978-11-20

7.  Physical characterization of myosin light chains.

Authors:  W F Stafford; A G Szent-Györgyi
Journal:  Biochemistry       Date:  1978-02-21       Impact factor: 3.162

8.  The concentration-dependence of macromolecular parameters.

Authors:  S E Harding; P Johnson
Journal:  Biochem J       Date:  1985-11-01       Impact factor: 3.857

9.  The use of covolume in the estimation of protein axial ratios.

Authors:  L W Nichol; D J Winzor
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

10.  Hydrodynamics and protein hydration.

Authors:  P G Squire; M E Himmel
Journal:  Arch Biochem Biophys       Date:  1979-08       Impact factor: 4.013

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  4 in total

1.  Helical model of smooth muscle myosin filament and the ribbons made of caldesmon: history revisited.

Authors:  Apolinary Sobieszek
Journal:  Eur Biophys J       Date:  2016-09-27       Impact factor: 1.733

2.  Biophysical Reviews' "meet the editors series"-a profile of Steve Harding's career in macromolecular hydrodynamics.

Authors:  Stephen E Harding
Journal:  Biophys Rev       Date:  2022-06-25

3.  Hydrodynamic modelling of protein conformation in solution: ELLIPS and HYDRO.

Authors:  José García de la Torre; Stephen E Harding
Journal:  Biophys Rev       Date:  2013-02-20

4.  Crystallohydrodynamics of protein assemblies: Combining sedimentation, viscometry, and x-ray scattering.

Authors:  Yanling Lu; Emma Longman; Kenneth G Davis; Alvaro Ortega; J Günter Grossmann; Terje E Michaelsen; José García de la Torre; Stephen E Harding
Journal:  Biophys J       Date:  2006-06-09       Impact factor: 4.033

  4 in total

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