Literature DB >> 19428711

Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405.

Thomas Rydzak1, David B Levin, Nazim Cicek, Richard Sparling.   

Abstract

End-product synthesis and enzyme activities involved in pyruvate catabolism, H(2) synthesis, and ethanol production in mid-log (OD(600) approximately 0.25), early stationary (OD(600) approximately 0.5), and stationary phase (OD(600) approximately 0.7) cell extracts were determined in Clostridium thermocellum ATCC 27405 grown in batch cultures on cellobiose. Carbon dioxide, hydrogen, ethanol, acetate and formate were major end-products and their production paralleled growth and cellobiose consumption. Lactate dehydrogenase, pyruvate:formate lyase, pyruvate:ferredoxin oxidoreductase, methyl viologen-dependant hydrogenase, ferredoxin-dependant hydrogenase, NADH-dependant hydrogenase, NADPH-dependant hydrogenase, NADH-dependant acetaldehyde dehydrogenase, NADH-dependant alcohol dehydogenase, and NADPH-dependant alcohol dehydrogenase activities were detected in all extracts, while pyruate dehydrogenase and formate dehydrogenase activities were not detected. All hydrogenase activities decreased (2-12-fold) as growth progressed from early exponential to stationary phase. Alcohol dehydrogenase activities fluctuated only marginally (<45%), while lactate dehydrogenase, pyruvate:formate lyase, and pyruvate:ferredoxin oxidoreductase remained constant in all cell extracts. We have proposed a pathway involved in pyruvate catabolism and end-product formation based on enzyme activity profiles in conjunction with bioinformatics analysis.

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Year:  2009        PMID: 19428711     DOI: 10.1016/j.jbiotec.2009.01.022

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  16 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

3.  Reassessment of the transhydrogenase/malate shunt pathway in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase.

Authors:  M Taillefer; T Rydzak; D B Levin; I J Oresnik; R Sparling
Journal:  Appl Environ Microbiol       Date:  2015-01-23       Impact factor: 4.792

4.  Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production.

Authors:  Seth B Roberts; Christopher M Gowen; J Paul Brooks; Stephen S Fong
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5.  Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.

Authors:  Shihui Yang; Richard J Giannone; Lezlee Dice; Zamin K Yang; Nancy L Engle; Timothy J Tschaplinski; Robert L Hettich; Steven D Brown
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6.  Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression.

Authors:  Thomas Rydzak; Peter D McQueen; Oleg V Krokhin; Vic Spicer; Peyman Ezzati; Ravi C Dwivedi; Dmitry Shamshurin; David B Levin; John A Wilkins; Richard Sparling
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7.  Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.

Authors:  Babu Raman; Catherine K McKeown; Miguel Rodriguez; Steven D Brown; Jonathan R Mielenz
Journal:  BMC Microbiol       Date:  2011-06-14       Impact factor: 3.605

8.  Elimination of formate production in Clostridium thermocellum.

Authors:  Thomas Rydzak; Lee R Lynd; Adam M Guss
Journal:  J Ind Microbiol Biotechnol       Date:  2015-07-11       Impact factor: 3.346

9.  Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq.

Authors:  Hui Wei; Yan Fu; Lauren Magnusson; John O Baker; Pin-Ching Maness; Qi Xu; Shihui Yang; Andrew Bowersox; Igor Bogorad; Wei Wang; Melvin P Tucker; Michael E Himmel; Shi-You Ding
Journal:  Front Microbiol       Date:  2014-04-11       Impact factor: 5.640

10.  Linking genome content to biofuel production yields: a meta-analysis of major catabolic pathways among select H2 and ethanol-producing bacteria.

Authors:  Carlo R Carere; Thomas Rydzak; Tobin J Verbeke; Nazim Cicek; David B Levin; Richard Sparling
Journal:  BMC Microbiol       Date:  2012-12-18       Impact factor: 3.605

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