Literature DB >> 19428172

Similarity studies of DNA sequences based on a new 2D graphical representation.

Guohua Huang1, Bo Liao, Yongfan Li, Yougui Yu.   

Abstract

We denoted the four nucleotides, A, T, G and C, as four two-component vectors, and illustrated a nucleotide sequence as a curve in the 2D space by concatenating the vectors representing the nucleotides in the sequence. We studied the similarities among multiple nucleotide sequences by comparing their corresponding curves, with the beta-globin genes from 7 species as an example.

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Year:  2009        PMID: 19428172     DOI: 10.1016/j.bpc.2009.03.013

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  4 in total

1.  W-curve alignments for HIV-1 genomic comparisons.

Authors:  Douglas J Cork; Steven Lembark; Sodsai Tovanabutra; Merlin L Robb; Jerome H Kim
Journal:  PLoS One       Date:  2010-06-01       Impact factor: 3.240

2.  Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison.

Authors:  Yushuang Li; Wenli Xiao
Journal:  Comput Math Methods Med       Date:  2016-06-14       Impact factor: 2.238

3.  One novel representation of DNA sequence based on the global and local position information.

Authors:  Zhiyi Mo; Wen Zhu; Yi Sun; Qilin Xiang; Ming Zheng; Min Chen; Zejun Li
Journal:  Sci Rep       Date:  2018-05-15       Impact factor: 4.379

4.  Generalized lattice graphs for 2D-visualization of biological information.

Authors:  H González-Díaz; L G Pérez-Montoto; A Duardo-Sanchez; E Paniagua; S Vázquez-Prieto; R Vilas; M A Dea-Ayuela; F Bolas-Fernández; C R Munteanu; J Dorado; J Costas; F M Ubeira
Journal:  J Theor Biol       Date:  2009-07-29       Impact factor: 2.691

  4 in total

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