Literature DB >> 19427868

Exclusion processes on a growing domain.

Benjamin J Binder1, Kerry A Landman.   

Abstract

A discrete model provides a useful framework for experimentalists to understand the interactions between growing tissues and other biological mechanisms. A cellular automata (CA) model with domain growth, cell motility and cell proliferation, based on cellular exclusion processes, is developed here. Average densities can be defined from the CA model and a continuum representation can be determined. The domain growth mechanism in the CA model gives rise to a Fokker-Planck equation in the corresponding continuum model, with a diffusive and a convective term. Deterministic continuum models derived from conservation laws do not include this diffusive term. The new diffusive term arises because of the stochasticity inherited from the CA mechanism for domain growth. We extend the models to multiple species and investigate the influence of the flux terms arising from the exclusion processes. The averaged CA agent densities are well approximated by the solution of nonlinear advection-diffusion equations, provided that the relative size of the proliferation processes to the diffusion processes is sufficiently small. This dual approach provides an understanding of the microscopic and macroscopic scales in a developmental process.

Mesh:

Year:  2009        PMID: 19427868     DOI: 10.1016/j.jtbi.2009.04.025

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  6 in total

1.  Bridging the gap between individual-based and continuum models of growing cell populations.

Authors:  Mark A J Chaplain; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  J Math Biol       Date:  2019-06-10       Impact factor: 2.259

2.  From a discrete model of chemotaxis with volume-filling to a generalized Patlak-Keller-Segel model.

Authors:  Federica Bubba; Tommaso Lorenzi; Fiona R Macfarlane
Journal:  Proc Math Phys Eng Sci       Date:  2020-05-13       Impact factor: 2.704

3.  Detection and characterization of chemotaxis without cell tracking.

Authors:  Jack D Hywood; Gregory Rice; Sophie V Pageon; Mark N Read; Maté Biro
Journal:  J R Soc Interface       Date:  2021-03-10       Impact factor: 4.118

Review 4.  Cell lineage tracing in the developing enteric nervous system: superstars revealed by experiment and simulation.

Authors:  Bevan L Cheeseman; Dongcheng Zhang; Benjamin J Binder; Donald F Newgreen; Kerry A Landman
Journal:  J R Soc Interface       Date:  2014-02-05       Impact factor: 4.118

5.  Exact solutions of linear reaction-diffusion processes on a uniformly growing domain: criteria for successful colonization.

Authors:  Matthew J Simpson
Journal:  PLoS One       Date:  2015-02-18       Impact factor: 3.240

6.  A Model for Cell Proliferation in a Developing Organism.

Authors:  Philip K Pollett; Laleh Tafakori; Peter G Taylor
Journal:  J Math Biol       Date:  2022-06-25       Impact factor: 2.164

  6 in total

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