Literature DB >> 19425543

Two-dimensional infrared spectroscopy of intermolecular hydrogen bonds in the condensed phase.

Thomas Elsaesser1.   

Abstract

Hydrogen bonding plays a key role in the structural, physical, and chemical properties of liquids such as water and in macromolecular structures such as proteins. Vibrational spectroscopy is an important tool for understanding hydrogen bonding because it provides a way to observe local molecular geometries and their interaction with the environment. Linear vibrational spectroscopy has mapped characteristic changes of vibrational spectra and the occurrence of new bands that form upon hydrogen bonding. However, linear vibrational spectroscopy gives very limited insight into ultrafast dynamics of the underlying molecular interactions, such as the motions of hydrogen-bonded groups, energy dissipation and delocalization, and the fluctuations within hydrogen-bonded structures that occur in the ultrafast time domain. Nonlinear vibrational spectroscopy with its femtosecond time resolution can discern these dynamic processes in real time and has emerged as an important tool for unraveling molecular dynamics and for quantifying interactions that govern the vibrational and structural dynamics of hydrogen bonds. This Account reviews recent progress originating from third-order nonlinear methods of coherent multidimensional vibrational spectroscopy. Ultrafast dynamics of intermolecular hydrogen bonds are addressed for a number of prototype systems: hydrogen-bonded carboxylic acid dimers in an aprotic liquid environment, the disordered fluctuating hydrogen-bond network of liquid water, and DNA oligomers interacting with water. Cyclic carboxylic acid dimers display a rich scheme of vibrational couplings, resulting in OH stretching absorption bands with highly complex spectral envelopes. Two-dimensional spectroscopy of acetic acid dimers in a nonpolar liquid environment demonstrates that multiple Fermi resonances of the OH stretching mode with overtones and combination tones of fingerprint vibrations dominate both the 2D and linear absorption spectra. The coupling of the OH stretching mode with low-frequency hydrogen-bonding modes leads to additional progressions and coherent low-frequency hydrogen-bond motions in the subpicosecond time domain. In water, the 2D spectra reveal ultrafast spectral diffusion on a sub-100 fs time scale caused by the ultrafast structural fluctuations of the strongly coupled hydrogen-bond network. Librational motions play a key role for the ultrafast loss of structural memory. Spectral diffusion rates are enhanced by resonant transfer of OH stretching quanta between water molecules, typically occurring on a 100 fs time scale. In DNA oligomers, femtosecond nonlinear vibrational spectroscopy resolves NH and OH stretching bands in the highly congested infrared spectra of these molecules, which contain alternating adenine-thymine pairs. Studies at different levels of hydration reveal the spectral signatures of water molecules directly interacting with the phosphate groups of DNA and of a second water species forming a fluctuating environment around the DNA oligomers. We expect that the application of 2D infrared spectroscopy in an extended spectral range will reveal the intrinsic coupling between water and specific functional units of DNA.

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Year:  2009        PMID: 19425543     DOI: 10.1021/ar900006u

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  10 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Proton transfer dynamics in the propionic acid dimer from path integral molecular dynamics calculations.

Authors:  Piotr Durlak; Zdzisław Latajka
Journal:  J Mol Model       Date:  2011-01-07       Impact factor: 1.810

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 4.  Water in protein hydration and ligand recognition.

Authors:  Manuela Maurer; Chris Oostenbrink
Journal:  J Mol Recognit       Date:  2019-08-27       Impact factor: 2.891

5.  The opposite effects of sodium and potassium cations on water dynamics.

Authors:  Qiang Zhang; Hailong Chen; Tianmin Wu; Tan Jin; Zhijun Pan; Junrong Zheng; Yiqin Gao; Wei Zhuang
Journal:  Chem Sci       Date:  2016-10-14       Impact factor: 9.825

6.  Two-Dimensional Electronic Spectroscopy Reveals Dynamics and Mechanisms of Solvent-Driven Inertial Relaxation in Polar BODIPY Dyes.

Authors:  Luca Bolzonello; Annalisa Polo; Andrea Volpato; Elena Meneghin; Massimiliano Cordaro; Mariachiara Trapani; Mariagrazia Fortino; Alfonso Pedone; Maria Angela Castriciano; Elisabetta Collini
Journal:  J Phys Chem Lett       Date:  2018-02-16       Impact factor: 6.475

7.  Fifth-order time-domain Raman spectroscopy of photoactive yellow protein for visualizing vibrational coupling in its excited state.

Authors:  Hikaru Kuramochi; Satoshi Takeuchi; Hironari Kamikubo; Mikio Kataoka; Tahei Tahara
Journal:  Sci Adv       Date:  2019-06-07       Impact factor: 14.136

8.  Composition-Dependent Hydrogen-Bonding Motifs and Dynamics in Brønsted Acid-Base Mixtures.

Authors:  Christian Malm; Leon A Prädel; Bogdan A Marekha; Maksim Grechko; Johannes Hunger
Journal:  J Phys Chem B       Date:  2020-08-06       Impact factor: 2.991

Review 9.  Two-dimensional Infrared Spectroscopy Reveals Better Insights of Structure and Dynamics of Protein.

Authors:  Kiran Sankar Maiti
Journal:  Molecules       Date:  2021-11-16       Impact factor: 4.411

10.  Water dynamics in protein hydration shells: the molecular origins of the dynamical perturbation.

Authors:  Aoife C Fogarty; Damien Laage
Journal:  J Phys Chem B       Date:  2014-02-10       Impact factor: 2.991

  10 in total

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