Literature DB >> 19421542

Carbohydrate-aromatic pi interactions: a test of density functionals and the DFT-D method.

Rajesh K Raju1, Anitha Ramraj, Ian H Hillier, Mark A Vincent, Neil A Burton.   

Abstract

The performance of a number of computational approaches based upon density functional theory (DFT) for the accurate description of carbohydrate-pi interactions is described. A database containing interaction energies of a small number of representative complexes, computed at a high ab initio level, is described, and is used to judge 18 different density functionals including the M05 and M06 families as well as the DFT method augmented with empirical dispersive corrections (DFT-D). The DFT-D method and the M06 functionals are found to perform particularly well, whilst traditional functionals such as B3LYP perform poorly. The interaction energies for 23 sugar-aromatic complexes calculated by the DFT-D method are compared with the values from the 18 functionals. Again, the M06 class of functional is found to be superior.

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Year:  2009        PMID: 19421542     DOI: 10.1039/b822877a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

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Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

2.  DNA-protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar.

Authors:  Katie A Wilson; Jennifer L Kellie; Stacey D Wetmore
Journal:  Nucleic Acids Res       Date:  2014-04-17       Impact factor: 16.971

Review 3.  CH/π Interactions in Carbohydrate Recognition.

Authors:  Vojtěch Spiwok
Journal:  Molecules       Date:  2017-06-23       Impact factor: 4.411

4.  Carbohydrate-aromatic interface and molecular architecture of lignocellulose.

Authors:  Alex Kirui; Wancheng Zhao; Fabien Deligey; Hui Yang; Xue Kang; Frederic Mentink-Vigier; Tuo Wang
Journal:  Nat Commun       Date:  2022-01-27       Impact factor: 17.694

  4 in total

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