Literature DB >> 19421154

Mechanisms of APOBEC3G-catalyzed processive deamination of deoxycytidine on single-stranded DNA.

Linda Chelico, Phuong Pham, Myron F Goodman.   

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Year:  2009        PMID： 19421154      PMCID： PMC2764237          DOI： 10.1038/nsmb0509-454

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  12 in total

1.  One- and three-dimensional pathways for proteins to reach specific DNA sites.

Authors:  N P Stanford; M D Szczelkun; J F Marko; S E Halford
Journal:  EMBO J       Date:  2000-12-01       Impact factor: 11.598

2.  Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome.

Authors:  Qin Yu; Renate König; Satish Pillai; Kristopher Chiles; Mary Kearney; Sarah Palmer; Douglas Richman; John M Coffin; Nathaniel R Landau
Journal:  Nat Struct Mol Biol       Date:  2004-04-18       Impact factor: 15.369

Review 3.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

4.  The retroviral hypermutation specificity of APOBEC3F and APOBEC3G is governed by the C-terminal DNA cytosine deaminase domain.

Authors:  Guylaine Haché; Mark T Liddament; Reuben S Harris
Journal:  J Biol Chem       Date:  2005-01-12       Impact factor: 5.157

5.  APOBEC3G DNA deaminase acts processively 3' --> 5' on single-stranded DNA.

Authors:  Linda Chelico; Phuong Pham; Peter Calabrese; Myron F Goodman
Journal:  Nat Struct Mol Biol       Date:  2006-04-23       Impact factor: 15.369

6.  DNA deaminases AID and APOBEC3G act processively on single-stranded DNA.

Authors:  Phuong Pham; Linda Chelico; Myron F Goodman
Journal:  DNA Repair (Amst)       Date:  2007-02-08

7.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

Authors:  O G Berg; R B Winter; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

8.  Biochemical analysis of hypermutational targeting by wild type and mutant activation-induced cytidine deaminase.

Authors:  Ronda Bransteitter; Phuong Pham; Peter Calabrese; Myron F Goodman
Journal:  J Biol Chem       Date:  2004-09-14       Impact factor: 5.157

9.  A model for oligomeric regulation of APOBEC3G cytosine deaminase-dependent restriction of HIV.

Authors:  Linda Chelico; Elizabeth J Sacho; Dorothy A Erie; Myron F Goodman
Journal:  J Biol Chem       Date:  2008-03-24       Impact factor: 5.157

10.  Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation.

Authors:  Phuong Pham; Ronda Bransteitter; John Petruska; Myron F Goodman
Journal:  Nature       Date:  2003-06-18       Impact factor: 49.962
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  18 in total

1.  An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers.

Authors:  Steven A Roberts; Michael S Lawrence; Leszek J Klimczak; Sara A Grimm; David Fargo; Petar Stojanov; Adam Kiezun; Gregory V Kryukov; Scott L Carter; Gordon Saksena; Shawn Harris; Ruchir R Shah; Michael A Resnick; Gad Getz; Dmitry A Gordenin
Journal:  Nat Genet       Date:  2013-07-14       Impact factor: 38.330

Review 2.  Multiple APOBEC3 restriction factors for HIV-1 and one Vif to rule them all.

Authors:  Belete A Desimmie; Krista A Delviks-Frankenberrry; Ryan C Burdick; DongFei Qi; Taisuke Izumi; Vinay K Pathak
Journal:  J Mol Biol       Date:  2013-11-02       Impact factor: 5.469

Review 3.  The current structural and functional understanding of APOBEC deaminases.

Authors:  Ronda Bransteitter; Courtney Prochnow; Xiaojiang S Chen
Journal:  Cell Mol Life Sci       Date:  2009-06-23       Impact factor: 9.261

4.  Evaluation of anti-HIV-1 mutagenic nucleoside analogues.

Authors:  Valérie Vivet-Boudou; Catherine Isel; Yazan El Safadi; Redmond P Smyth; Géraldine Laumond; Christiane Moog; Jean-Christophe Paillart; Roland Marquet
Journal:  J Biol Chem       Date:  2014-11-14       Impact factor: 5.157

5.  Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Ming Li; Reuben S Harris; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

6.  Clustered and genome-wide transient mutagenesis in human cancers: Hypermutation without permanent mutators or loss of fitness.

Authors:  Steven A Roberts; Dmitry A Gordenin
Journal:  Bioessays       Date:  2014-02-26       Impact factor: 4.345

7.  Remarkable lethal G-to-A mutations in vif-proficient HIV-1 provirus by individual APOBEC3 proteins in humanized mice.

Authors:  Kei Sato; Taisuke Izumi; Naoko Misawa; Tomoko Kobayashi; Yoshiki Yamashita; Masahide Ohmichi; Mamoru Ito; Akifumi Takaori-Kondo; Yoshio Koyanagi
Journal:  J Virol       Date:  2010-07-07       Impact factor: 5.103

8.  RNA binding to APOBEC3G induces the disassembly of functional deaminase complexes by displacing single-stranded DNA substrates.

Authors:  Bogdan Polevoda; William M McDougall; Bradley N Tun; Michael Cheung; Jason D Salter; Alan E Friedman; Harold C Smith
Journal:  Nucleic Acids Res       Date:  2015-09-30       Impact factor: 16.971

9.  Nanoscale Characterization of Interaction of APOBEC3G with RNA.

Authors:  Yangang Pan; Zhiqiang Sun; Atanu Maiti; Tapan Kanai; Hiroshi Matsuo; Ming Li; Reuben S Harris; Luda S Shlyakhtenko; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2017-03-03       Impact factor: 3.162

10.  Rationalisation of the differences between APOBEC3G structures from crystallography and NMR studies by molecular dynamics simulations.

Authors:  Flavia Autore; Julien R C Bergeron; Michael H Malim; Franca Fraternali; Hendrik Huthoff
Journal:  PLoS One       Date:  2010-07-12       Impact factor: 3.240
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