Literature DB >> 19416726

Theoretical mimicry of biomembranes.

Parimal Kar1, Max Seel, Thomas Weidemann, Siegfried Höfinger.   

Abstract

The study of membrane proteins requires a proper consideration of the specific environment provided by the biomembrane. The compositional complexity of this environment poses great challenges to all experimental and theoretical approaches. In this article a rather simple theoretical concept is discussed for its ability to mimic the biomembrane. The biomembrane is approximated by three mimicry solvents forming individual continuum layers of characteristic physical properties. Several specific structural problems are studied with a focus on the biological significance of such an approach. Our results support the general perception that the biomembrane is crucial for correct positioning and embedding of its constituents. The described model provides a semi-quantitative tool of potential interest to many problems in structural membrane biology.

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Year:  2009        PMID: 19416726     DOI: 10.1016/j.febslet.2009.04.040

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  4 in total

1.  Energetic basis for drug resistance of HIV-1 protease mutants against amprenavir.

Authors:  Parimal Kar; Volker Knecht
Journal:  J Comput Aided Mol Des       Date:  2012-02-14       Impact factor: 3.686

2.  Transferring the PRIMO Coarse-Grained Force Field to the Membrane Environment: Simulations of Membrane Proteins and Helix-Helix Association.

Authors:  Parimal Kar; Srinivasa Murthy Gopal; Yi-Ming Cheng; Afra Panahi; Michael Feig
Journal:  J Chem Theory Comput       Date:  2014-06-16       Impact factor: 6.006

3.  Precise Quantification of Molybdate In Vitro by the FRET-Based Nanosensor 'MolyProbe'.

Authors:  Kevin D Oliphant; Marius Karger; Yoichi Nakanishi; Ralf R Mendel
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

4.  Common force field thermodynamics of cholesterol.

Authors:  Francesco Giangreco; Eiji Yamamoto; Yoshinori Hirano; Milan Hodoscek; Volker Knecht; Matteo di Giosia; Matteo Calvaresi; Francesco Zerbetto; Kenji Yasuoka; Tetsu Narumi; Masato Yasui; Siegfried Höfinger
Journal:  ScientificWorldJournal       Date:  2013-11-05
  4 in total

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