Literature DB >> 19415262

Identifying the structure of the active sites of human recombinant prolidase.

Roberta Besio1, Stefania Alleva, Antonella Forlino, Anna Lupi, Carlo Meneghini, Velia Minicozzi, Antonella Profumo, Francesco Stellato, Ruggero Tenni, Silvia Morante.   

Abstract

In this paper we provide a detailed biochemical and structural characterization of the active site of recombinant human prolidase, a dimeric metalloenzyme, whose misfunctioning causes a recessive connective tissue disorder (prolidase deficiency) characterized by severe skin lesions, mental retardation and respiratory tract infections. It is known that the protein can host two metal ions in the active site of each constituent monomer. We prove that two different kinds of metals (Mn and Zn) can be simultaneously present in the protein active sites with the protein partially maintaining its enzymatic activity. Structural information extracted from X-ray absorption spectroscopy measurements have been used to yield a full reconstruction of the atomic environment around each one of the two monomeric active sites. In particular, as for the metal ion occupation configuration of the recombinant human prolidase, we have found that one of the two active sites is occupied by two Zn ions and the second one by one Zn and one Mn ion. In both dinuclear units a histidine residue is bound to a Zn ion.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19415262     DOI: 10.1007/s00249-009-0459-4

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  30 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Metalloaminopeptidases: common functional themes in disparate structural surroundings.

Authors:  W Todd Lowther; Brian W Matthews
Journal:  Chem Rev       Date:  2002-12       Impact factor: 60.622

3.  Characterization of recombinant prolidase from Lactococcus lactis- changes in substrate specificity by metal cations, and allosteric behavior of the peptidase.

Authors:  Soo I Yang; Takuji Tanaka
Journal:  FEBS J       Date:  2007-12-06       Impact factor: 5.542

4.  Multiple-scattering regime and higher-order correlations in x-ray-absorption spectra of liquid solutions.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-10-15

5.  Multiple-scattering calculations of x-ray-absorption spectra.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1995-07-15

6.  Divalent metal binding properties of the methionyl aminopeptidase from Escherichia coli.

Authors:  V M D'souza; B Bennett; A J Copik; R C Holz
Journal:  Biochemistry       Date:  2000-04-04       Impact factor: 3.162

Review 7.  Cobalt proteins.

Authors:  M Kobayashi; S Shimizu
Journal:  Eur J Biochem       Date:  1999-04

Review 8.  Proline specific peptidases.

Authors:  D F Cunningham; B O'Connor
Journal:  Biochim Biophys Acta       Date:  1997-12-05

Review 9.  Human prolidase and prolidase deficiency: an overview on the characterization of the enzyme involved in proline recycling and on the effects of its mutations.

Authors:  A Lupi; R Tenni; A Rossi; G Cetta; A Forlino
Journal:  Amino Acids       Date:  2008-03-14       Impact factor: 3.520

10.  The purification and characterization of a proline dipeptidase from guinea pig brain.

Authors:  P Browne; G O'Cuinn
Journal:  J Biol Chem       Date:  1983-05-25       Impact factor: 5.157

View more
  10 in total

1.  Partial Rescue of Biochemical Parameters After Hematopoietic Stem Cell Transplantation in a Patient with Prolidase Deficiency Due to Two Novel PEPD Mutations.

Authors:  Désirée Caselli; Rolando Cimaz; Roberta Besio; Antonio Rossi; Ersilia De Lorenzi; Raffaella Colombo; Luca Cantarini; Silvia Riva; Marco Spada; Antonella Forlino; Maurizio Aricò
Journal:  JIMD Rep       Date:  2011-09-27

Review 2.  X-ray absorption spectroscopy of dinuclear metallohydrolases.

Authors:  David L Tierney; Gerhard Schenk
Journal:  Biophys J       Date:  2014-09-16       Impact factor: 4.033

3.  Prolidase directly binds and activates epidermal growth factor receptor and stimulates downstream signaling.

Authors:  Lu Yang; Yun Li; Yi Ding; Kyoung-Soo Choi; A Latif Kazim; Yuesheng Zhang
Journal:  J Biol Chem       Date:  2012-12-04       Impact factor: 5.157

4.  The five-to-six-coordination transition of ferric human serum heme-albumin is allosterically-modulated by ibuprofen and warfarin: a combined XAS and MD study.

Authors:  Carlo Meneghini; Loris Leboffe; Monica Bionducci; Gabriella Fanali; Massimiliano Meli; Giorgio Colombo; Mauro Fasano; Paolo Ascenzi; Settimio Mobilio
Journal:  PLoS One       Date:  2014-08-25       Impact factor: 3.240

5.  A plasma proteolysis pathway comprising blood coagulation proteases.

Authors:  Lu Yang; Yun Li; Arup Bhattacharya; Yuesheng Zhang
Journal:  Oncotarget       Date:  2016-07-05

6.  Structure-Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa.

Authors:  Cui-Ting Peng; Li Liu; Chang-Cheng Li; Li-Hui He; Tao Li; Ya-Lin Shen; Chao Gao; Ning-Yu Wang; Yong Xia; Yi-Bo Zhu; Ying-Jie Song; Qian Lei; Luo-Ting Yu; Rui Bao
Journal:  Front Microbiol       Date:  2017-12-05       Impact factor: 5.640

7.  PEPD is a pivotal regulator of p53 tumor suppressor.

Authors:  Lu Yang; Yun Li; Arup Bhattacharya; Yuesheng Zhang
Journal:  Nat Commun       Date:  2017-12-12       Impact factor: 14.919

8.  Kinetic and structural evidences on human prolidase pathological mutants suggest strategies for enzyme functional rescue.

Authors:  Roberta Besio; Roberta Gioia; Federica Cossu; Enrico Monzani; Stefania Nicolis; Lucia Cucca; Antonella Profumo; Luigi Casella; Ruggero Tenni; Martino Bolognesi; Antonio Rossi; Antonella Forlino
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

9.  Identification of prolidase as a high affinity ligand of the ErbB2 receptor and its regulation of ErbB2 signaling and cell growth.

Authors:  L Yang; Y Li; Y Zhang
Journal:  Cell Death Dis       Date:  2014-05-08       Impact factor: 8.469

Review 10.  The Functions of ZIP8, ZIP14, and ZnT10 in the Regulation of Systemic Manganese Homeostasis.

Authors:  James W W Winslow; Kirsten H Limesand; Ningning Zhao
Journal:  Int J Mol Sci       Date:  2020-05-07       Impact factor: 5.923

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.