Literature DB >> 19414279

Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways.

Seong-Jae Kim1, Ohgew Kweon, Carl E Cerniglia.   

Abstract

The growing availability of genome sequences and advancement of high-throughput omics and analytical chemistry technologies have reinvigorated the study of biodegradation processes in aromatic hydrocarbon catabolism. In particular, proteomics approaches globally have identified and quantified bacterial enzymes responsible for aromatic hydrocarbon metabolism, which significantly assists in determining strategies for the biodegradation of aromatic hydrocarbons with applications in environmental bioremediation.

Entities:  

Mesh：

Substances：

Year:  2009        PMID： 19414279     DOI： 10.1016/j.mib.2009.03.006

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  16 in total

1.  Functional robustness of a polycyclic aromatic hydrocarbon metabolic network examined in a nidA aromatic ring-hydroxylating oxygenase mutant of Mycobacterium vanbaalenii PYR-1.

Authors:  Seong-Jae Kim; Jaekyeong Song; Ohgew Kweon; Ricky D Holland; Dae-Wi Kim; Jongnam Kim; Li-Rong Yu; Carl E Cerniglia
Journal:  Appl Environ Microbiol       Date:  2012-03-09       Impact factor: 4.792

2.  Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vanbaalenii PYR-1.

Authors:  Ohgew Kweon; Seong-Jae Kim; Ricky D Holland; Hongyan Chen; Dae-Wi Kim; Yuan Gao; Li-Rong Yu; Songjoon Baek; Dong-Heon Baek; Hongsik Ahn; Carl E Cerniglia
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

3.  Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1.

Authors:  Ohgew Kweon; Seong-Jae Kim; James P Freeman; Jaekyeong Song; Songjoon Baek; Carl E Cerniglia
Journal:  mBio       Date:  2010-06-15       Impact factor: 7.867

4.  Use of Substrate-Induced Gene Expression in Metagenomic Analysis of an Aromatic Hydrocarbon-Contaminated Soil.

Authors:  Matthew J Meier; E Suzanne Paterson; Iain B Lambert
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

5.  Role of Glyoxylate Shunt in Oxidative Stress Response.

Authors:  Sungeun Ahn; Jaejoon Jung; In-Ae Jang; Eugene L Madsen; Woojun Park
Journal:  J Biol Chem       Date:  2016-04-01       Impact factor: 5.157

6.  Fluorinated waste and firefighting activities: biodegradation of hydrocarbons from petrochemical refinery soil co-contaminated with halogenated foams.

Authors:  Renato Nallin Montagnolli; Paulo Renato Matos Lopes; Ederio Dino Bidoia
Journal:  Environ Sci Pollut Res Int       Date:  2018-02-27       Impact factor: 4.223

7.  Analysis of hydrocarbon-contaminated groundwater metagenomes as revealed by high-throughput sequencing.

Authors:  Nathlee S Abbai; Balakrishna Pillay
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

8.  Petroleum-degrading enzymes: bioremediation and new prospects.

Authors:  R S Peixoto; A B Vermelho; A S Rosado
Journal:  Enzyme Res       Date:  2011-07-24

9.  Proteomic characterization of plasmid pLA1 for biodegradation of polycyclic aromatic hydrocarbons in the marine bacterium, Novosphingobium pentaromativorans US6-1.

Authors:  Sung Ho Yun; Chi-Won Choi; Sang-Yeop Lee; Yeol Gyun Lee; Joseph Kwon; Sun Hee Leem; Young Ho Chung; Hyung-Yeel Kahng; Sang Jin Kim; Kae Kyoung Kwon; Seung Il Kim
Journal:  PLoS One       Date:  2014-03-07       Impact factor: 3.240

10.  A gene expression study of the activities of aromatic ring-cleavage dioxygenases in Mycobacterium gilvum PYR-GCK to changes in salinity and pH during pyrene degradation.

Authors:  Abimbola Comfort Badejo; Adegoke Olugboyega Badejo; Kyung Hoon Shin; Young Gyu Chai
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.