Literature DB >> 19413954

Specificity and robustness of the mammalian MAPK-IEG network.

Craig J Thalhauser1, Natalia L Komarova.   

Abstract

The mitogen-activated protein kinase cascade is a conserved signal transduction pathway found in organisms of complexity spanning from yeast to humans. In many mammalian tissue types, this pathway can correctly transduce signals from different extracellular messengers, leading to specific and often mutually exclusive cellular responses. The transduced signal is tuned by a complicated set of positive and negative feedback control mechanisms and fed into a downstream gene expression network. This network, based on the immediate early gene system, has two possible, mutually exclusive outcomes. Using a mathematical model, we study how different stimuli lead to different temporal signal structure. Further, we investigate how each of the feedback controls contributes to the overall specificity of the gene expression output, and hypothesize that the complicated nature of the mammalian mitogen-activated protein kinase pathway results in a system able to robustly identify and transduce the proper signal without investing in two completely separate signal cascades. Finally, we quantify the role of the RKIP protein in shaping the signal, and propose a novel mechanism of its involvement in cancer metastasis.

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Year:  2009        PMID: 19413954      PMCID: PMC2711407          DOI: 10.1016/j.bpj.2008.10.076

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  An explicit representation of the Luria-Delbrück distribution.

Authors:  W P Angerer
Journal:  J Math Biol       Date:  2001-02       Impact factor: 2.259

2.  Raf kinase inhibitor protein regulation of raf and MAPK signaling.

Authors:  Suzanne Hagan; Rey Garcia; Amardeep Dhillon; Walter Kolch
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

Review 3.  When kinases meet mathematics: the systems biology of MAPK signalling.

Authors:  Walter Kolch; Muffy Calder; David Gilbert
Journal:  FEBS Lett       Date:  2005-03-21       Impact factor: 4.124

Review 4.  Coordinating ERK/MAPK signalling through scaffolds and inhibitors.

Authors:  Walter Kolch
Journal:  Nat Rev Mol Cell Biol       Date:  2005-11       Impact factor: 94.444

5.  Colored Petri net modeling and simulation of signal transduction pathways.

Authors:  Dong-Yup Lee; Ralf Zimmer; Sang Yup Lee; Sunwon Park
Journal:  Metab Eng       Date:  2005-12-22       Impact factor: 9.783

6.  Mathematical models of specificity in cell signaling.

Authors:  Lee Bardwell; Xiufen Zou; Qing Nie; Natalia L Komarova
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

7.  The fixed-size Luria-Delbruck model with a nonzero death rate.

Authors:  Natalia L Komarova; Lin Wu; Pierre Baldi
Journal:  Math Biosci       Date:  2007-05-03       Impact factor: 2.144

8.  Prediction and validation of the distinct dynamics of transient and sustained ERK activation.

Authors:  Satoru Sasagawa; Yu-ichi Ozaki; Kazuhiro Fujita; Shinya Kuroda
Journal:  Nat Cell Biol       Date:  2005-03-27       Impact factor: 28.824

9.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

10.  The RKIP (Raf-1 Kinase Inhibitor Protein) conserved pocket binds to the phosphorylated N-region of Raf-1 and inhibits the Raf-1-mediated activated phosphorylation of MEK.

Authors:  Oliver Rath; Sungdae Park; Hui-hui Tang; Mark J Banfield; R Leo Brady; Yie Chia Lee; John D Dignam; John M Sedivy; Walter Kolch; Kam C Yeung
Journal:  Cell Signal       Date:  2008-01-24       Impact factor: 4.315

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  3 in total

Review 1.  Raf kinase inhibitory protein (RKIP): functional pleiotropy in the mammalian brain.

Authors:  Harrod H Ling; Lucia Mendoza-Viveros; Neel Mehta; Hai-Ying M Cheng
Journal:  Crit Rev Oncog       Date:  2014

2.  Regulation of MAPK/ERK signaling and photic entrainment of the suprachiasmatic nucleus circadian clock by Raf kinase inhibitor protein.

Authors:  Ghadi Antoun; Pascale Bouchard-Cannon; Pascale Bouchard Cannon; Hai-Ying Mary Cheng
Journal:  J Neurosci       Date:  2012-04-04       Impact factor: 6.167

3.  Signal response sensitivity in the yeast mitogen-activated protein kinase cascade.

Authors:  Craig J Thalhauser; Natalia L Komarova
Journal:  PLoS One       Date:  2010-07-23       Impact factor: 3.240

  3 in total

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