Literature DB >> 19412889

Many paths to one goal? The proteins that recognize methylated DNA in eukaryotes.

Nobuhiro Sasai1, Pierre-Antoine Defossez.   

Abstract

DNA methylation is an epigenetically inherited chemical modification that is associated with transcriptional silencing and is essential for mammalian development. The DNA methylation signal is read out by methyl-CpG binding proteins (MBPs) that specifically bind to methylated DNA. Three structurally divergent families of MBPs have been identified so far: the MBD family, the SRA family and a family of proteins with Zinc fingers. In this review, we describe how the distinct families of methyl-CpG binding proteins have evolved, how they each recognize and maintain the DNA methylation mark, and finally how they turn this mark into biological effect.

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Year:  2009        PMID: 19412889     DOI: 10.1387/ijdb.082652ns

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.203


  39 in total

1.  A Conformational Switch in the Zinc Finger Protein Kaiso Mediates Differential Readout of Specific and Methylated DNA Sequences.

Authors:  Evgenia N Nikolova; Robyn L Stanfield; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2020-05-12       Impact factor: 3.162

Review 2.  Child health, developmental plasticity, and epigenetic programming.

Authors:  Z Hochberg; R Feil; M Constancia; M Fraga; C Junien; J-C Carel; P Boileau; Y Le Bouc; C L Deal; K Lillycrop; R Scharfmann; A Sheppard; M Skinner; M Szyf; R A Waterland; D J Waxman; E Whitelaw; K Ong; K Albertsson-Wikland
Journal:  Endocr Rev       Date:  2010-10-22       Impact factor: 19.871

Review 3.  Cross-talk between site-specific transcription factors and DNA methylation states.

Authors:  Adam Blattler; Peggy J Farnham
Journal:  J Biol Chem       Date:  2013-10-22       Impact factor: 5.157

Review 4.  Understanding paternal genome demethylation through live-cell imaging and siRNA.

Authors:  Kazuo Yamagata; Yuki Okada
Journal:  Cell Mol Life Sci       Date:  2011-01-15       Impact factor: 9.261

5.  Disease variants alter transcription factor levels and methylation of their binding sites.

Authors:  Marc Jan Bonder; René Luijk; Daria V Zhernakova; Matthijs Moed; Patrick Deelen; Martijn Vermaat; Maarten van Iterson; Freerk van Dijk; Michiel van Galen; Jan Bot; Roderick C Slieker; P Mila Jhamai; Michael Verbiest; H Eka D Suchiman; Marijn Verkerk; Ruud van der Breggen; Jeroen van Rooij; Nico Lakenberg; Wibowo Arindrarto; Szymon M Kielbasa; Iris Jonkers; Peter van 't Hof; Irene Nooren; Marian Beekman; Joris Deelen; Diana van Heemst; Alexandra Zhernakova; Ettje F Tigchelaar; Morris A Swertz; Albert Hofman; André G Uitterlinden; René Pool; Jenny van Dongen; Jouke J Hottenga; Coen D A Stehouwer; Carla J H van der Kallen; Casper G Schalkwijk; Leonard H van den Berg; Erik W van Zwet; Hailiang Mei; Yang Li; Mathieu Lemire; Thomas J Hudson; P Eline Slagboom; Cisca Wijmenga; Jan H Veldink; Marleen M J van Greevenbroek; Cornelia M van Duijn; Dorret I Boomsma; Aaron Isaacs; Rick Jansen; Joyce B J van Meurs; Peter A C 't Hoen; Lude Franke; Bastiaan T Heijmans
Journal:  Nat Genet       Date:  2016-12-05       Impact factor: 38.330

Review 6.  Epigenetics and bacterial infections.

Authors:  Hélène Bierne; Mélanie Hamon; Pascale Cossart
Journal:  Cold Spring Harb Perspect Med       Date:  2012-12-01       Impact factor: 6.915

7.  Sequence-specific recognition of methylated DNA by human zinc-finger proteins.

Authors:  Nobuhiro Sasai; Mitsuyoshi Nakao; Pierre-Antoine Defossez
Journal:  Nucleic Acids Res       Date:  2010-04-19       Impact factor: 16.971

8.  A yeast one-hybrid system to screen for methylated DNA-binding proteins.

Authors:  Shu-Ying Feng; Kazuhisa Ota; Takashi Ito
Journal:  Nucleic Acids Res       Date:  2010-08-26       Impact factor: 16.971

Review 9.  The roles of retinoic acid and retinoic acid receptors in inducing epigenetic changes.

Authors:  Alison Urvalek; Kristian Bruun Laursen; Lorraine J Gudas
Journal:  Subcell Biochem       Date:  2014

Review 10.  The role of genetics in the establishment and maintenance of the epigenome.

Authors:  Covadonga Huidobro; Agustin F Fernandez; Mario F Fraga
Journal:  Cell Mol Life Sci       Date:  2013-03-10       Impact factor: 9.261

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