Literature DB >> 19410012

Navigating structure-activity landscapes.

Jürgen Bajorath1, Lisa Peltason, Mathias Wawer, Rajarshi Guha, Michael S Lajiness, John H Van Drie.   

Abstract

The problem of how to explore structure-activity relationships (SARs) systematically is still largely unsolved in medicinal chemistry. Recently, data analysis tools have been introduced to navigate activity landscapes and to assess SARs on a large scale. Initial investigations reveal a surprising heterogeneity among SARs and shed light on the relationship between 'global' and 'local' SAR features. Moreover, insights are provided into the fundamental issue of why modeling tools work well in some cases, but not in others.

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Year:  2009        PMID: 19410012     DOI: 10.1016/j.drudis.2009.04.003

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  25 in total

1.  Activity cliffs and activity cliff generators based on chemotype-related activity landscapes.

Authors:  Jaime Pérez-Villanueva; Oscar Méndez-Lucio; Olivia Soria-Arteche; José L Medina-Franco
Journal:  Mol Divers       Date:  2015-07-07       Impact factor: 2.943

Review 2.  QSAR without borders.

Authors:  Eugene N Muratov; Jürgen Bajorath; Robert P Sheridan; Igor V Tetko; Dmitry Filimonov; Vladimir Poroikov; Tudor I Oprea; Igor I Baskin; Alexandre Varnek; Adrian Roitberg; Olexandr Isayev; Stefano Curtarolo; Denis Fourches; Yoram Cohen; Alan Aspuru-Guzik; David A Winkler; Dimitris Agrafiotis; Artem Cherkasov; Alexander Tropsha
Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

Review 3.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

4.  Chemical transformations that yield compounds with distinct activity profiles.

Authors:  Ye Hu; Jürgen Bajorath
Journal:  ACS Med Chem Lett       Date:  2011-04-13       Impact factor: 4.345

5.  Extracting SAR Information from a Large Collection of Anti-Malarial Screening Hits by NSG-SPT Analysis.

Authors:  Mathias Wawer; Jürgen Bajorath
Journal:  ACS Med Chem Lett       Date:  2011-01-05       Impact factor: 4.345

6.  Chemical transferability of functional groups follows from the nearsightedness of electronic matter.

Authors:  Stijn Fias; Farnaz Heidar-Zadeh; Paul Geerlings; Paul W Ayers
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

7.  Chemoinformatics: a perspective from an academic setting in Latin America.

Authors:  J Jesús Naveja; C Iluhí Oviedo-Osornio; Nicole N Trujillo-Minero; José L Medina-Franco
Journal:  Mol Divers       Date:  2017-12-04       Impact factor: 2.943

8.  Developing Enhanced Blood-Brain Barrier Permeability Models: Integrating External Bio-Assay Data in QSAR Modeling.

Authors:  Wenyi Wang; Marlene T Kim; Alexander Sedykh; Hao Zhu
Journal:  Pharm Res       Date:  2015-04-11       Impact factor: 4.200

9.  Design, Synthesis, and Evaluation of Novel 3-Carboranyl-1,8-Naphthalimide Derivatives as Potential Anticancer Agents.

Authors:  Sebastian Rykowski; Dorota Gurda-Woźna; Marta Orlicka-Płocka; Agnieszka Fedoruk-Wyszomirska; Małgorzata Giel-Pietraszuk; Eliza Wyszko; Aleksandra Kowalczyk; Paweł Stączek; Andrzej Bak; Agnieszka Kiliszek; Wojciech Rypniewski; Agnieszka B Olejniczak
Journal:  Int J Mol Sci       Date:  2021-03-09       Impact factor: 5.923

10.  Conditional probabilistic analysis for prediction of the activity landscape and relative compound activities.

Authors:  Radleigh G Santos; Marc A Giulianotti; Richard A Houghten; José L Medina-Franco
Journal:  J Chem Inf Model       Date:  2013-09-17       Impact factor: 4.956

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