Literature DB >> 19409918

A point process driven multiple change point model: a robust resistant approach.

Srikesh G Arunajadai1.   

Abstract

Helicases are a class of enzymes involved in Ribonucleic Acid (RNA) metabolism. In this work a statistical method is proposed to analyze the individual mechanistic cycle of these motor proteins which are crucial to the understanding of their cellular functions. The RNA unwinding by NS3 helicase is hypothesized to occur in a series of discrete steps and the steps themselves occurring in accordance to an underlying point process. A point process driven multiple change point model is proposed to model the RNA unwinding mechanism. The methods are portable to other areas of applications as well. Algorithms based on robust-resistant statistical procedures are proposed to detect the change points. Both sequential and a posteriori change point models are considered. The relevant parameters of interest are estimated using a maximum likelihood approach. Simulations are performed to assess the performance of the methodology.

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Year:  2009        PMID: 19409918     DOI: 10.1016/j.mbs.2009.04.003

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  3 in total

1.  Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase.

Authors:  Wei Cheng; Srikesh G Arunajadai; Jeffrey R Moffitt; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2011-09-23       Impact factor: 47.728

2.  RNA unwinding by NS3 helicase: a statistical approach.

Authors:  Srikesh G Arunajadai
Journal:  PLoS One       Date:  2009-09-22       Impact factor: 3.240

3.  Step detection in single-molecule real time trajectories embedded in correlated noise.

Authors:  Srikesh G Arunajadai; Wei Cheng
Journal:  PLoS One       Date:  2013-03-22       Impact factor: 3.240

  3 in total

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