Literature DB >> 19409060

Statistical nuclear texture analysis in cancer research: a review of methods and applications.

Birgitte Nielsen1, Fritz Albregtsen, Havard E Danielsen.   

Abstract

In digital pathology, the field of nuclear texture analysis gives information about the spatial arrangement of the pixel gray levels in a digitized microscopic nuclear image, providing statistical texture measures that may be used as quantitative tools for diagnosis and prognosis of human cancer. In the present work, we have reviewed nuclear texture analysis in human cancer research, with emphasis on (i) statistical texture analysis methods, (ii) methods for feature evaluation and feature set selection, (iii) classification methods and error estimation, and (iv) the recent literature in the field, focusing on diagnosis- and prognosis-related applications. The application study covers the period from 1995 to 2007. In order to find nuclear features that discriminate robustly between cases from different diagnostic or prognostic classes, a statistical evaluation of features must be performed, and this demands careful experimental design. The present review reveals that it is quite common to evaluate a large number of features on a limited learning set of clinical material, without testing the chosen classifier on an independent validation data set. This easily leads to overoptimistic results. Out of 160 papers, we found only 30 papers in which the classifier was evaluated on an independent validation data set. Even in these studies, some good results have been hampered by small validation groups. However, it is encouraging to note that those publications meeting the requirements of an optimal study are generally showing good results. Thus, it is well documented that nuclear texture analysis is showing promising results as a novel diagnostic and/or prognostic marker. Hopefully, we will soon see that these promising studies will be replicated in large, prospective, multicenter trials.

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Year:  2008        PMID: 19409060     DOI: 10.1615/critrevoncog.v14.i2-3.10

Source DB:  PubMed          Journal:  Crit Rev Oncog        ISSN: 0893-9675


  12 in total

1.  Chromatin changes in papillary thyroid carcinomas may predict patient outcome.

Authors:  R C Ferreira; L L Cunha; P S Matos; R L Adam; F Soares; J Vassallo; L S Ward
Journal:  Cell Oncol (Dordr)       Date:  2012-12-05       Impact factor: 6.730

2.  Epigenetically induced changes in nuclear textural patterns and gelatinase expression in human fibrosarcoma cells.

Authors:  M Poplineau; C Doliwa; M Schnekenburger; F Antonicelli; M Diederich; A Trussardi-Régnier; J Dufer
Journal:  Cell Prolif       Date:  2013-04       Impact factor: 6.831

3.  Comparison of nuclear texture analysis and image cytometric DNA analysis for the assessment of dysplasia in Barrett's oesophagus.

Authors:  J M Dunn; T Hveem; M Pretorius; D Oukrif; B Nielsen; F Albregtsen; L B Lovat; M R Novelli; H E Danielsen
Journal:  Br J Cancer       Date:  2011-09-20       Impact factor: 7.640

4.  Chromatin organisation and cancer prognosis: a pan-cancer study.

Authors:  Andreas Kleppe; Fritz Albregtsen; Ljiljana Vlatkovic; Manohar Pradhan; Birgitte Nielsen; Tarjei S Hveem; Hanne A Askautrud; Gunnar B Kristensen; Arild Nesbakken; Jone Trovik; Håkon Wæhre; Ian Tomlinson; Neil A Shepherd; Marco Novelli; David J Kerr; Håvard E Danielsen
Journal:  Lancet Oncol       Date:  2018-02-03       Impact factor: 54.433

5.  Prognostic value of nucleotyping, DNA ploidy and stroma in high-risk stage II colon cancer.

Authors:  Lujing Yang; Pengju Chen; Li Zhang; Lin Wang; Tingting Sun; Lixin Zhou; Zhongwu Li; Aiwen Wu
Journal:  Br J Cancer       Date:  2020-07-06       Impact factor: 7.640

6.  Automated classification of immunostaining patterns in breast tissue from the human protein atlas.

Authors:  Issac Niwas Swamidoss; Andreas Kårsnäs; Virginie Uhlmann; Palanisamy Ponnusamy; Caroline Kampf; Martin Simonsson; Carolina Wählby; Robin Strand
Journal:  J Pathol Inform       Date:  2013-03-30

7.  Entropy-based adaptive nuclear texture features are independent prognostic markers in a total population of uterine sarcomas.

Authors:  Birgitte Nielsen; Tarjei Sveinsgjerd Hveem; Wanja Kildal; Vera M Abeler; Gunnar B Kristensen; Fritz Albregtsen; Håvard E Danielsen
Journal:  Cytometry A       Date:  2014-12-05       Impact factor: 4.355

8.  Chromatin changes predict recurrence after radical prostatectomy.

Authors:  Tarjei S Hveem; Andreas Kleppe; Ljiljana Vlatkovic; Elin Ersvær; Håkon Wæhre; Birgitte Nielsen; Marte Avranden Kjær; Manohar Pradhan; Rolf Anders Syvertsen; John Arne Nesheim; Knut Liestøl; Fritz Albregtsen; Håvard E Danielsen
Journal:  Br J Cancer       Date:  2016-04-28       Impact factor: 7.640

Review 9.  Spatial Genome Organization and Its Emerging Role as a Potential Diagnosis Tool.

Authors:  Karen J Meaburn
Journal:  Front Genet       Date:  2016-07-26       Impact factor: 4.599

10.  Predictive Nuclear Chromatin Characteristics of Melanoma and Dysplastic Nevi.

Authors:  Matthew G Hanna; Chi Liu; Gustavo K Rohde; Rajendra Singh
Journal:  J Pathol Inform       Date:  2017-04-10
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