Literature DB >> 19404477

Mutational spaces for leaf shape and size.

Sandra Bensmihen, Andrew I Hanna, Nicolas B Langlade, José Luis Micol, Andrew Bangham, Enrico S Coen.   

Abstract

A key approach to understanding how genes control growth and form is to analyze mutants in which shape and size have been perturbed. Although many mutants of this kind have been described in plants and animals, a general quantitative framework for describing them has yet to be established. Here we describe an approach based on Principal Component Analysis of organ landmarks and outlines. Applying this method to a collection of leaf shape mutants in Arabidopsis and Antirrhinum allows low-dimensional spaces to be constructed that capture the key variations in shape and size. Mutant phenotypes can be represented as vectors in these allometric spaces, allowing additive gene interactions to be readily described. The principal axis of each allometric space reflects size variation and an associated shape change. The shape change is similar to that observed during the later stages of normal development, suggesting that many phenotypic differences involve modulations in the timing of growth arrest. Comparison between allometric mutant spaces from different species reveals a similar range of phenotypic possibilities. The spaces therefore provide a general quantitative framework for exploring and comparing the development and evolution of form.

Entities:  

Year:  2008        PMID: 19404477      PMCID: PMC2645570          DOI: 10.2976/1.2836738

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  31 in total

1.  A mutational analysis of leaf morphogenesis in Arabidopsis thaliana.

Authors:  G Berná; P Robles; J L Micol
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

2.  Cell cycle: the key to plant growth control?

Authors:  Gerrit T S Beemster; Fabio Fiorani; Dirk Inzé
Journal:  Trends Plant Sci       Date:  2003-04       Impact factor: 18.313

3.  SHAPE: a computer program package for quantitative evaluation of biological shapes based on elliptic Fourier descriptors.

Authors:  H Iwata; Y Ukai
Journal:  J Hered       Date:  2002 Sep-Oct       Impact factor: 2.645

4.  Large-scale histological analysis of leaf mutants using two simple leaf observation methods: identification of novel genetic pathways governing the size and shape of leaves.

Authors:  Gorou Horiguchi; Ushio Fujikura; Ali Ferjani; Naoko Ishikawa; Hirokazu Tsukaya
Journal:  Plant J       Date:  2006-11       Impact factor: 6.417

5.  Architecture of coastal and desert Encelia farinosa (Asteraceae): consequences of plastic and heritable variation in leaf characters.

Authors:  David C Housman; Mary V Price; Richard A Redak
Journal:  Am J Bot       Date:  2002-08       Impact factor: 3.844

6.  Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis.

Authors:  M E Byrne; R Barley; M Curtis; J M Arroyo; M Dunham; A Hudson; R A Martienssen
Journal:  Nature       Date:  2000 Dec 21-28       Impact factor: 49.962

7.  The SCABRA3 nuclear gene encodes the plastid RpoTp RNA polymerase, which is required for chloroplast biogenesis and mesophyll cell proliferation in Arabidopsis.

Authors:  Andrea Hricová; Victor Quesada; José Luis Micol
Journal:  Plant Physiol       Date:  2006-05-12       Impact factor: 8.340

8.  INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.

Authors:  José María Barrero; Rebeca González-Bayón; Juan Carlos del Pozo; María Rosa Ponce; José Luis Micol
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

9.  GRAMINIFOLIA promotes growth and polarity of Antirrhinum leaves.

Authors:  John F Golz; Mario Roccaro; Robert Kuzoff; Andrew Hudson
Journal:  Development       Date:  2004-06-30       Impact factor: 6.868

10.  The PHANTASTICA gene encodes a MYB transcription factor involved in growth and dorsoventrality of lateral organs in Antirrhinum.

Authors:  R Waites; H R Selvadurai; I R Oliver; A Hudson
Journal:  Cell       Date:  1998-05-29       Impact factor: 41.582

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  21 in total

1.  Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry.

Authors:  Mitchell J Feldmann; Michael A Hardigan; Randi A Famula; Cindy M López; Amy Tabb; Glenn S Cole; Steven J Knapp
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

2.  Mapping morphological shape as a high-dimensional functional curve.

Authors:  Guifang Fu; Mian Huang; Wenhao Bo; Han Hao; Rongling Wu
Journal:  Brief Bioinform       Date:  2018-05-01       Impact factor: 11.622

3.  Growth dynamics of the Arabidopsis fruit is mediated by cell expansion.

Authors:  Juan-José Ripoll; Mingyuan Zhu; Stephanie Brocke; Cindy T Hon; Martin F Yanofsky; Arezki Boudaoud; Adrienne H K Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

4.  Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod.

Authors:  Johannes Knuesting; Christophe Riondet; Carlos Maria; Inga Kruse; Noëlle Bécuwe; Nicolas König; Carsten Berndt; Sébastien Tourrette; Jocelyne Guilleminot-Montoya; Enrique Herrero; Frédéric Gaymard; Janneke Balk; Gemma Belli; Renate Scheibe; Jean-Philippe Reichheld; Nicolas Rouhier; Pascal Rey
Journal:  Plant Physiol       Date:  2015-02-19       Impact factor: 8.340

5.  A hyperactive quantitative trait locus allele of Arabidopsis BRX contributes to natural variation in root growth vigor.

Authors:  Julien Beuchat; Shuwei Li; Laura Ragni; Chikako Shindo; Michael H Kohn; Christian S Hardtke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

Review 6.  Evolution and development of shape: integrating quantitative approaches.

Authors:  Christian Peter Klingenberg
Journal:  Nat Rev Genet       Date:  2010-08-10       Impact factor: 53.242

7.  Cryptic variation between species and the basis of hybrid performance.

Authors:  Ulises Rosas; Nick H Barton; Lucy Copsey; Pierre Barbier de Reuille; Enrico Coen
Journal:  PLoS Biol       Date:  2010-07-20       Impact factor: 8.029

8.  RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Authors:  Daniela Ristova; Ulises Rosas; Gabriel Krouk; Sandrine Ruffel; Kenneth D Birnbaum; Gloria M Coruzzi
Journal:  Plant Physiol       Date:  2013-01-18       Impact factor: 8.340

9.  Paleotemperature proxies from leaf fossils reinterpreted in light of evolutionary history.

Authors:  Stefan A Little; Steven W Kembel; Peter Wilf
Journal:  PLoS One       Date:  2010-12-22       Impact factor: 3.240

10.  Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Authors:  Ulises Rosas; Angelica Cibrian-Jaramillo; Daniela Ristova; Joshua A Banta; Miriam L Gifford; Angela Huihui Fan; Royce W Zhou; Grace Jaeyoon Kim; Gabriel Krouk; Kenneth D Birnbaum; Michael D Purugganan; Gloria M Coruzzi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

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